BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923245

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35550.1 | Symbols:  | elongation factor Tu C-terminal domai...   250    9e-66
  AT1G35545.1 | Symbols:  | other RNA | chr1:13110517-13112832 RE...   137    8e-32


> AT1G35550.1 | Symbols:  | elongation factor Tu C-terminal domain-containing 
protein | chr1:13112506-13113136 FORWARD LENGTH=631
Length=631

 Score =  250 bits (135),  Expect = 9e-66
 Identities = 307/385 (80%), Gaps = 32/385 (8%)
 Strand=Plus/Plus

Query  102  CTTAAGCGTGGGTACGTCGCGTCAAACTCCAAGGATGATCATGCTAAGGGTGCTGCCAAC  161
            |||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||| | |
Sbjct  136  CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGCTAGC  195

Query  162  TTCACTTCCCAGGTCATCATCAAAAACCACCCTAGTCAGATTAGTAATGGTTACGCCCAG  221
            ||||| ||||||||| ||||||  ||||||| | |||||| |  |||     |     | 
Sbjct  196  TTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGA-T--TAA-----A-----A-  241

Query  222  TGGTCCGCCACTGGTTACGCCCCGGTTCTTGATTGCCACACCTCTCACATTGTAGTCAAA  281
                     | ||||||| |||| |||||||||||||||||||||||||||| |||||| 
Sbjct  242  ---------A-TGGTTACACCCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAG  291

Query  282  TTCTCTGAGATCTTGACCAAGATTAACAGGCGCT-CAAGT-A-GAATTATTGAGAATGAG  338
            |||||||||||||||||||||||| || |||| | |  || | ||   |||||||| |||
Sbjct  292  TTCTCTGAGATCTTGACCAAGATTGACTGGCG-TACTGGTCATGAG--ATTGAGAAGGAG  348

Query  339  CCCAAAGTTTT-AAAGAACGGTGATGCAGCTACGGTCAAGATGACTCCTACCAAGCTTAT  397
            || |||||||| ||||||| |||| || ||||   | || |||||||| ||||||| |||
Sbjct  349  CC-AAAGTTTTTAAAGAACAGTGAGGCCGCTATTATTAATATGACTCCCACCAAGCCTAT  407

Query  398  GGTGGTCGAGGCTTTCTCTAAATACCCACCCTTGAGACGTTTCACTGTTAGGGACATGAG  457
            |||||| ||||||| ||||   ||||||||| || |||||||  || |||||||||||||
Sbjct  408  GGTGGTTGAGGCTTACTCTGCGTACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAG  467

Query  458  GTAAATTGTTGATGTTGGAGTTATC  482
            | |||  |||| |||||||||||||
Sbjct  468  GCAAACCGTTGGTGTTGGAGTTATC  492


> AT1G35545.1 | Symbols:  | other RNA | chr1:13110517-13112832 
REVERSE LENGTH=814
Length=814

 Score =  137 bits (74),  Expect = 8e-32
 Identities = 170/212 (80%), Gaps = 24/212 (11%)
 Strand=Plus/Minus

Query  102  CTTAAGCGTGGGTACGTCGCGTCAAACTCCAAGGATGATCATGCTAAGGGTGCTGCCAAC  161
            |||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||| | |
Sbjct  192  CTTAAGCGTGGGTACGTCGCCTCAAACTCCAAGGATGATCCTGCAAAGGTTGCTGCTAGC  133

Query  162  TTCACTTCCCAGGTCATCATCAAAAACCACCCTAGTCAGATTAGTAATGGTTACGCCCAG  221
            ||||| ||||||||| ||||||  ||||||| | |||||| |  |||     |     | 
Sbjct  132  TTCACCTCCCAGGTCGTCATCATGAACCACCTTGGTCAGA-T--TAA-----A-----A-  87

Query  222  TGGTCCGCCACTGGTTACGCCCCGGTTCTTGATTGCCACACCTCTCACATTGTAGTCAAA  281
                     | ||||||| |||| |||||||||||||||||||||||||||| |||||| 
Sbjct  86   ---------A-TGGTTACACCCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAG  37

Query  282  TTCTCTGAGATCTTGACCAAGATTAACAGGCG  313
            |||||||||||||||||||||||| || ||||
Sbjct  36   TTCTCTGAGATCTTGACCAAGATTGACTGGCG  5



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5