BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923251
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48970.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 3059 0.0
> AT1G48970.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr1:18113714-18117833 REVERSE LENGTH=2441
Length=2441
Score = 3059 bits (1656), Expect = 0.0
Identities = 1908/2030 (94%), Gaps = 16/2030 (1%)
Strand=Plus/Plus
Query 19 CTCCATGGATACTCGTCGTGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 78
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CTCAATGGATACTCGTCGCGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 342
Query 79 CACATCAATCGAGCCGCCTCCAGAATC--C-TCACAACGACCGAATCGAAGCCAATCCGG 135
||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||
Sbjct 343 CACATCAATCGAGCCGCCTCCAGAATCATCATTACAACGACCAAATCGAAGCCAATCCGG 402
Query 136 TCCAGTAGAGGCAACAACGTCTTCGTCTCCTCTCTCCAATTCACCCTCCGGCAATTTAAT 195
||||||||| ||||| || ||||| |||||||||||| ||||||| ||||| || |||||
Sbjct 403 TCCAGTAGATGCAACCACCTCTTCTTCTCCTCTCTCCGATTCACCTTCCGGTAACTTAAT 462
Query 196 ATCTCCGGTTC-TAATTCCACCGTCGCGTCATCACTCTGACAATTTAACCAC-C-C---G 249
||||||| || ||||||||||||||||||| || || |||||||||||| | | | |
Sbjct 463 TTCTCCGG-TCTTAATTCCACCGTCGCGTCACCATTCCGACAATTTAACCTCTCGCGTTG 521
Query 250 C-GTTGCTGCTGCTGCTCCTGTACCCGTCCCTGGACCTGCTGCTTTCCGCCGATACTTAG 308
| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 522 CTGCTGCTGCTGCTGCTCCTGTGCCCGTCCCTGGACCTGCCGCTTTCCGCCGATACTTAA 581
Query 309 CTCAGGACCGGAGTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 368
||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTCCTGAACGGACTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 641
Query 369 CATCAACACCGTCGAGTAATGGAGAGTTTTCTGAGGATTCTGCTTCTCTGTTTGGGTTCC 428
||||| |||| |||||||| |||| | ||||||||||||| |||||||||||||||||||
Sbjct 642 CATCATCACCCTCGAGTAACGGAGGGCTTTCTGAGGATTCGGCTTCTCTGTTTGGGTTCC 701
Query 429 AACGGAGTGATTCTACGAAATTATCAGCAAGTTTTCCTAATGGAGGCTTTGATTTGACTT 488
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 702 AACGGAGTGATTCGACGAAATTATCAGCAAGCTTACCTAATGGAGGCTTTGATTTGACTC 761
Query 489 TAGCTGTTAGAGCTCCTCAGGAATCGGAAACCAAAATTGCAACGGCGTCGGCTTC-CGAA 547
||||||||||||||||||||||||| |||||||||||||| || |||| ||||| | ||
Sbjct 762 TAGCTGTTAGAGCTCCTCAGGAATCTGAAACCAAAATTGCGACCACGTCTGCTTCTC-AA 820
Query 548 GGGAAAAAGAAGATCAAAGAATATCTTGCAGGAAAGAGTGAATCAGTGACCACAAAGCCC 607
||||||||||||||| ||| | || | ||||||||||| || | ||||||||| |||
Sbjct 821 GGGAAAAAGAAGATCGCCGAA-GT-TT-CTGGAAAGAGTGAGTCTGCGACCACAAAACCC 877
Query 608 CAGAAGGAAAAGGAACAAAAAGCACTGAAAGATAAAACCACTAAAGCAGAAAGGCGGGCT 667
|||||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||
Sbjct 878 CAGAAGGAAAAGGAACCAAAAGCATTGAAAGATAAAACCACTAAAGCAGAAAGACGTGCC 937
Query 668 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGACGTGCA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 938 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGGCGTGCA 997
Query 728 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTACCAAAAAGCCCCAACCAAAGAAAGAA 787
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 998 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTGCCATAAAGCCCCAACCAAAGAAAGAA 1057
Query 788 AGACTTCCCGTCACATCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 847
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGACTTCCCGTCACGTCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 1117
Query 848 AGGATGGATGTCCCTCAGACACTAATGCAGTATGACGATAGAAGCCGAGTGGATAAAGCT 907
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 1118 AGGATGGATGTCCCTCAGACACAAATGCAGTATGATGATAAAAGCCGAGTGGATAAAGCT 1177
Query 908 AAGAGGCGTGCTGTGGTTGAACAGGCCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 967
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1178 AAGAGGCGAGCTGTGGTTGAACAGACCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 1237
Query 968 CTTCCTCAATATGAACGCGGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1027
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CTTCCTCAATACGAACGCAGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1297
Query 1028 GATTCCATACACCATGCGGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1087
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GATTCCATACACCATGCAGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1357
Query 1088 GGGGACAATGCGCGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1147
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GGGGACAATGCACGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1417
Query 1148 ATTACACCTCCAATGAAAGACCTGACCATGGACTTGACAACCAAAATAAATGGTTATGTT 1207
| ||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1418 AGTACACCTCCTATGAAAGACCTGACCATGGACTTGACAGCCAAGATAAACGGTTATGTT 1477
Query 1208 TCATTCTTGATAGAATGTCGTCCGCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1267
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCATTCTTGATAGAATGTCGTCCCCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1537
Query 1268 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAGTCAGAGGCAAAAATTTCCCTT 1327
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1538 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAATCAGAGGCAAAAAGTTCCCTC 1597
Query 1328 TGTTCTGACATTGGTCGTTTCATAGACGAGAAAATAATTCTTGCAGACAAGGCAATCGTG 1387
|||||||||||||| || |||||||||||||| | |||| ||||||| ||||||||||||
Sbjct 1598 TGTTCTGACATTGGCCGGTTCATAGACGAGAAGACAATTATTGCAGATAAGGCAATCGTG 1657
Query 1388 CAACACGCTGTAACAAAAATCAGAGACGGAGAAGTCCTTCTCACATACGGATTCTCTTGC 1447
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1658 CAACACGCCGTAACAAAAATCAGAGACGGAGAAGTTCTTCTTACATATGGATTCTCTTGT 1717
Query 1448 GTGGTTGAAATGATTCTCTTATACGCCCATGAGATTGGGAAAAAATTCCGCGTAGTGATT 1507
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1718 GTGGTTGAAATGATTCTCCTATACGCCCATGAGATTGGGAAAAAGTTCCGCGTAGTGATT 1777
Query 1508 GTAGACTCACGCCCTAATCTTGAAGGGCAAAAGCTACTTCGTAGACTTGTGACTCGTGGC 1567
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1778 GTAGACTCACGCCCTAACCTTGAAGGGCAAAAGCTACTCCGTAGACTTGTGACTCGTGGC 1837
Query 1568 CTCGACTGTACCTACACTCATATAAACGCCATTTCCTACATCATGCGTGAAGCTACACGT 1627
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1838 CTCGACTGTACCTACACTCATATAAATGCCATTTCCTACATCATGCGTGAGGCTACACGT 1897
Query 1628 GTTTTTCTTGGGGCTTCATCAATATTCTCGAATGGAACTCTTTATGCAAGAGTTGGCACA 1687
|||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1898 GTTTTTCTCGGTGCTTCATCAATATACTCGAATGGAACTCTTTACGCAAGAGTTGGCACA 1957
Query 1688 GCCTGCATTGCAATGGTTGCAAATGCATTTAGTGTTCCTGTAATTGTGTGTTGTGAAGCT 1747
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1958 TCCTGCATTGCAATGGTTGCAAACGCATTTAGTGTTCCTGTAATTGTTTGTTGTGAAGCT 2017
Query 1748 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGTGATCCA 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2018 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGCGATCCT 2077
Query 1808 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACGATAGAC 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2078 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACAATGGAC 2137
Query 1868 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTACGATTCTACTCCTTCAGAATATATA 1927
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2138 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTATGATTCTACTCCTTCAGAATATATA 2197
Query 1928 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 2257
Query 1988 GAATACAGGAGAGAACACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2037
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2258 GAATACAGGAGAGAAAACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100953295995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5