BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923263

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G02660.1 | Symbols:  | F-box associated ubiquitination effec...  84.2    1e-15
  AT2G16450.1 | Symbols:  | F-box and associated interaction doma...  63.9    1e-09


> AT2G02660.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266

 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 100/124 (81%), Gaps = 14/124 (11%)
 Strand=Plus/Plus

Query  200  TGAAGGGATATGCATCAATGGGGTTTAT-TATTACTTTGCTGTA-CGAACTGA-CAAAGA  256
            ||| |||||||||||||||||||||| | |||| ||| |||| |  ||| ||| |  |||
Sbjct  594  TGATGGGATATGCATCAATGGGGTTT-TGTATTTCTTAGCTG-AGAGAAATGAGC-TAGA  650

Query  257  GTACTATGAAACGCATGTGATAGTTTGCTTTGATGTTAGGTCTGAGATATTCA-AGTTTA  315
            || |  ||  |   ||||||||||||||||||||||||||||||||| ||||| | | ||
Sbjct  651  GT-C--TG--A-TTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACA-TATA  703

Query  316  TTGA  319
            ||||
Sbjct  704  TTGA  707


> AT2G16450.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 42/46 (91%), Gaps = 0/46 (0%)
 Strand=Plus/Plus

Query  274  TGATAGTTTGCTTTGATGTTAGGTCTGAGATATTCAAGTTTATTGA  319
            |||||||||||||||||||||||||||| | |||||  ||||||||
Sbjct  725  TGATAGTTTGCTTTGATGTTAGGTCTGAAAAATTCACCTTTATTGA  770



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25468712529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5