BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923264
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49100.1 | Symbols: | Leucine-rich repeat protein kinase fa... 595 2e-169
> AT1G49100.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:18166147-18170105 REVERSE LENGTH=2667
Length=2667
Score = 595 bits (322), Expect = 2e-169
Identities = 367/389 (94%), Gaps = 1/389 (0%)
Strand=Plus/Plus
Query 109 GTTATA-GGTACCCCGATGATCTCAACGACCGTAGATGGTTCCCATTCTCATATGAGGAG 167
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 619 GTTTTACGGTACCCCGATGATGTCAACGACCGTAGATGGTTCCCATTCTCATATAAGGAG 678
Query 168 TGGACACTTGTAACTACCACTCTCAATGTAAACACTTCAAATGGTTTTGATCTACCACAA 227
|||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGGAAAATTGTAACCACAACTCTCAATGTAAACACTTCAAATGGTTTTGATCTACCACAA 738
Query 228 GGTGCAATGGCATCGGCTGCAACACGTGTGAATGACAATGGAACATGGGAATTTCCGTGG 287
||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 739 GGTGCAATGGCATCGGCTGCAACCCGTGTTAATGATAATGGGACATGGGAATTTCCATGG 798
Query 288 AGCTTAAAGGATTCTACCACACGGTTTCACATTTACCTTCACTTCGCAGAGCTTCAAACT 347
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AGCTTAGAGGATTCTACCACACGGTTTCACATTTACCTTCACTTCGCAGAGCTTCAAACT 858
Query 348 TTGTTAGCCAACGAGACCAGGGAATTCAATGTTTTGTTGAATGGAAAAAATTATTATGGA 407
||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||
Sbjct 859 TTGTTAGCCAACGAGACTAGAGAATTCAATGTTTTGCTGAATGGAAAAGTTTATTATGGA 918
Query 408 CCTTTTAGTCCTAAAATGTTAAGTATAGATACTATGAGCCCCCAACCCGATTCGAAATTG 467
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 919 CCTTATAGTCCTAAAATGTTAAGTATAGATACTATGAGCCCCCAACCCGATTCGACATTG 978
Query 468 ACATGTAAAGGAGGGAGTTGCCTCTTGCA 496
|||||||||||||| ||||||||||||||
Sbjct 979 ACATGTAAAGGAGGAAGTTGCCTCTTGCA 1007
Score = 381 bits (206), Expect = 6e-105
Identities = 248/268 (93%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 489 CTCTTG--CA-AAATTTAAGTGGAAACAATTTTAGTGGTCAACTTCCTGAAAAGTTTATA 545
|||||| || ||| |||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 1387 CTCTTGATCATAAACTTAAGTGGAAACAATTTTAGCGGTCAACTTCCTCAAAAGCTTATA 1446
Query 546 CAGAAGAAAGGATTGAAATTGAATGTTGAAGGCAACCCTAAGCTTCTTTGTACAAAAGGA 605
| |||||| || |||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1447 GATAAGAAAAGACTGAAGCTGAATGTTGAAGGAAACCCTAAGCTTCTTTGCACAAAAGGA 1506
Query 606 CCATGTGGAAACAAACATGGAGTAGGTGGACATCCCAAAAAGAGTATAATTGTACCGATT 665
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1507 CCATGTGGAAATAAACCTGGAGAAGGTGGACATCCCAAAAAGAGTATAATTGTACCGGTT 1566
Query 666 GTCTCATCAGTTGCTTTAATAGCTGTTCTTATAGCTGCATTGGTTTTGTTTTTGGTTCTT 725
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1567 GTCTCATCAGTTGCTTTAATAGCTATTCTTATAGCTGCATTGGTTTTGTTTTTGGTTCTT 1626
Query 726 AGAAAGAAAAATCCATCAAGGAGTAAAG 753
||||||||||||||||||||||||||||
Sbjct 1627 AGAAAGAAAAATCCATCAAGGAGTAAAG 1654
Score = 135 bits (73), Expect = 5e-31
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 21 ATGGAGAAGTATTTTCATGGAGTTTTATGTGTGTCCATCATCACATTTGCTTTTATACAT 80
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1 ATGGAGAAGTATTTTCATGGAGTTTTATGTGTGTTCATCATCACAGTTGCTTTTATACAT 60
Query 81 GTTGTTCAGGCTCAAGATC 99
|||||||||||||||||||
Sbjct 61 GTTGTTCAGGCTCAAGATC 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5