BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923270
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49130.1 | Symbols: | B-box type zinc finger protein with C... 1232 0.0
> AT1G49130.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:18174740-18175964 REVERSE LENGTH=1010
Length=1010
Score = 1232 bits (667), Expect = 0.0
Identities = 897/999 (90%), Gaps = 51/999 (5%)
Strand=Plus/Plus
Query 10 CAGAAATTAAATTATGATTTGGGAGAACCAA-ACTGATGTCAAGCAGCAACGAGCTTGCG 68
|||||| |||||||||||| || ||||| | ||||||||||||| |||||||||||
Sbjct 57 CAGAAA--AAATTATGATTTCAAAGTACCAAGA-AGATGTCAAGCAGCCACGAGCTTGCG 113
Query 69 AACTGTGTAAGAACAAACACGCGGTTTGGTATTGTGCTTCGGATGATGCTTTCTTGTGCC 128
|||| ||| |||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 114 AACTTTGTCTGAACAAACACGCAGTTTGGTACTGTGCCTCCGATGATGCTTTCTTGTGCC 173
Query 129 ATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTGGCGACAAAACACGAGAGAGTTT 188
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 174 ATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTAGCGACAAAACACGAGAGAGTTT 233
Query 189 GTCTTAGAACAAATGAGATATCGAATGATGTGCTTCGAGGAACAACATCAAACC-CGGTT 247
||||||||||||| ||||||||||||||||||| | | |||||||||| |||| |||||
Sbjct 234 GTCTTAGAACAAACGAGATATCGAATGATGTGCGTGGGGGAACAACAT-TAACCTCGGTT 292
Query 248 TGGCACAGCGGG-TTCAGAAGAAAAGCAAGAACACCTAGAGCCCGGTTTGATAAAAAGCC 306
|||||||||||| ||| |||||||||||||||| |||||| | |||| ||| ||||||||
Sbjct 293 TGGCACAGCGGGTTTC-GAAGAAAAGCAAGAACTCCTAGATCTCGGTATGAGAAAAAGCC 351
Query 307 ACAAGAAAAGATAGATGATGAGAAAAGAAGAGAAGATCCTCGTGTTCCCGAGATTGGAGG 366
|||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 352 ACAACAAAAGATAGATGATGAGAGAAGAAGGGAAGATCCTCGTGTTCCCGAGATTGGAGG 411
Query 367 CGAAGTGATGTGTTTCATACCGGAA-CTAAATGATGATGATATGACTTCACTTGTGCCAG 425
||||||||||| ||||||||| ||| | ||||||||||||||||||||| ||||||||||
Sbjct 412 CGAAGTGATGTTTTTCATACCAGAAGC-AAATGATGATGATATGACTTCTCTTGTGCCAG 470
Query 426 AGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGAAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGAAA 530
Query 486 CAACGAAACAATTCAACTTTGAAGAAGAAACTGATGCAAAGGAGGATCTCTGTTACAATG 545
||||||||||||||||||||||||||||| |||| ||| ||||||||| | ||||||||
Sbjct 531 CAACGAAACAATTCAACTTTGAAGAAGAAGCTGACACAATGGAGGATCTATATTACAATG 590
Query 546 GAGAAGATGAAGAAGAAGTTAAAACTGATGGAGCTGAAGCATGTCCTG-AGCAATCTTTG 604
||||||| | ||||| | |||||||||||||||||||||||||||| | |||| ||||
Sbjct 591 GAGAAGA--A-GAAGA--T-AAAACTGATGGAGCTGAAGCATGTCCTGGA-CAATATTTG 643
Query 605 ATGAGCTGCAAGAAGGATTACGACAATGTCATAACGGTTTCAGCAAAGACAGAAGAAATT 664
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 644 ATGAGCTGCAAGAAAGATTACGACAATGTCATAACGGTTTCAGAAAAGACAGAAGAAATT 703
Query 665 GAAGATTGTTATGAGAATAAAGCAAGGCAGAGGAACATGTTACTTAAACTCAATTACGAA 724
|||||||||||||||||||| |||||||| || | | || | | | | |||||
Sbjct 704 GAAGATTGTTATGAGAATAATGCAAGGCATAG-A-C-TG--A---A---T---T-ACGAA 748
Query 725 AATGTTATAGCAGCTTGGGATAAACAAGAATCTCCAAGAAACCAAACTGAATTTAACAAC 784
||||||||||||||||||||||||||||||||||| ||| | || || ||||||
Sbjct 749 AATGTTATAGCAGCTTGGGATAAACAAGAATCTCCTAGAGATGTAA---AA---AACAAC 802
Query 785 ACAAGTAACTTGCAGTTAGTTCCTCCATTGCAGGGGATagaggagaagagagtaagcaac 844
||||||| ||| ||| ||||||||||| | || |||||||||||||||||||| ||
Sbjct 803 ACAAGTAGCTTCCAGCTAGTTCCTCCA--G--GG--ATAGAGGAGAAGAGAGTAAG-AA- 854
Query 845 agaagtgagagagaagctagagtttggagatacagagaTAAAAGGAAGAATCGTTTGTTC 904
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 -G---TGAGAGAGAAGCTAGAGTTTGGAGATACAGAGATAAAAGGAAGAATCGTTTGTTC 910
Query 905 GAGAAGAAGATAAGGTACGAGGTTAGAAAGGTTAACGCCGACAAAAGGCCGAGAATGAAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GAGAAGAAGATAAGGTACGAGGTTAGAAAGGTTAACGCCGACAAAAGGCCGAGAATGAAA 970
Query 965 GGTCAATTTGTCCGAAGATCTTTAGCCATCGACTCTTAG 1003
|||| |||||||||| |||||||||||||||||||||||
Sbjct 971 GGTCGATTTGTCCGACGATCTTTAGCCATCGACTCTTAG 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5