BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923281

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49230.1 | Symbols:  | RING/U-box superfamily protein | chr1...   689    0.0  


> AT1G49230.1 | Symbols:  | RING/U-box superfamily protein | chr1:18209261-18210128 
FORWARD LENGTH=868
Length=868

 Score =  689 bits (373),  Expect = 0.0
 Identities = 436/465 (94%), Gaps = 9/465 (2%)
 Strand=Plus/Plus

Query  1    TATCTTAAAACTAAGTTATCATGTCCACTACCACTTCCA----C-TCT-CACCATGAAAC  54
            |||||||||||||||||||||||| |||||||| |||||    | | | |||||| ||||
Sbjct  40   TATCTTAAAACTAAGTTATCATGTGCACTACCATTTCCATTTCCATTTCCACCATAAAAC  99

Query  55   CAACTGAGTTCTTTCAAGAAATTATTGGAAGTTCTTACTCAAGAAAATTACTATTTCATA  114
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  100  CAACTGAGATCTTTCAAGAAATTCTTGGAAGTTCTTACTCAAGAAAATTACTATTTCATA  159

Query  115  CCCATGATCAATCACCAACTCCGGCACCATCCCCGTATGTAGGCGATGACCACTTTGATG  174
            |||||||||||||||||||||| ||||||||||| |||||||||||| || |||||||||
Sbjct  160  CCCATGATCAATCACCAACTCCAGCACCATCCCCATATGTAGGCGATAACAACTTTGATG  219

Query  175  CAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCTCTCGTTTGCTCACTTGGACTCA  234
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  220  CAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCACTTGTTTGCTCACTTGGACTCA  279

Query  235  ATTCTATAATAAGATGTGCCTTGAGGTGCTCCAATTTAGTACCATCTGAAGCTGGTG---  291
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  280  ATTCTATAATAAGATGTGCCTTGAGGTGCTCCAATTTAGTACCATCTGAAGCTGGTGGTG  339

Query  292  ACAACTACCCCGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTTGAAGAGGTTCC  351
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  340  ACAACTATCCTGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTTGAAGAGTTTCC  399

Query  352  AGACAGTAAGTTACTCTACTGAACTGAATCTGCCTGGCTTAGATACCGAGTGTGCTATCT  411
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  400  AGACAGTAAGTTACTCTACTGAACTAAATCTGCCTGGCTTAGATACCGAGTGTGCTATCT  459

Query  412  GTCTCTCGGAATTTGTACCCGAAGAGCGTGTGAAGCTGCTGCCGa  456
            ||||||||||||||||| |||| || |||||||||||| ||||||
Sbjct  460  GTCTCTCGGAATTTGTAGCCGAGGAACGTGTGAAGCTGTTGCCGA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5