BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923282

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycero...   364    3e-100


> AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycerol 
synthase 5 | chr3:22406406-22408597 FORWARD LENGTH=1689
Length=1689

 Score =  364 bits (197),  Expect = 3e-100
 Identities = 323/380 (85%), Gaps = 23/380 (6%)
 Strand=Plus/Plus

Query  1    CTTTCTGATT-TTGGATTTCAATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCC-TGT  58
            ||||| ||||   ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct  111  CTTTCCGATTACCGGATTCCAATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCAT-T  169

Query  59   ACCCCTCTCATTGAGCTCTCTCTGTACATGTCCTTGCCGTTCCACT-CAGAGAAAATCTC  117
            ||| || ||||||||||||||||||||||| |||||||||||| || || || |||| ||
Sbjct  170  ACCGCTTTCATTGAGCTCTCTCTGTACATGCCCTTGCCGTTCCTCTCCA-AGGAAATATC  228

Query  118  TTCTTCTTCCCCATTTCTCTGAAAAGTATTTGAATTTGCGTCTCGTCGATCCCAAACCAT  177
            |  ||||||| || ||||||||||||    |  |       | |  |||  ||  |   |
Sbjct  229  TAATTCTTCCTCAATTCTCTGAAAAG----T--A-------C-C--CGAAACC--ATTGT  270

Query  178  TGTCTCATTCTCGCTTTAATTGGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCAC  237
            |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| |
Sbjct  271  TGTCTCATTCTCGCTTTACTCCGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCTC  330

Query  238  GAGCTGAATCAAATCAAATTGGTGATGATGGCAACTCAAAGGAGGAACACGGCAGAGATC  297
            ||||||||||||||||||||||||| |||| |||||||||||||||||||  || |||||
Sbjct  331  GAGCTGAATCAAATCAAATTGGTGACGATGCCAACTCAAAGGAGGAACACAACATAGATC  390

Query  298  AAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTCGATTCTCAGGAGCAGAAGTCTAGAA  357
            |||||||||||||||||||||||||||||||||| |||  |||| |||| || |||||||
Sbjct  391  AAGAATTGCAAAATGTTGAAGAAGATTCGAGTTTAGATGATCAGAAGCAAAAATCTAGAA  450

Query  358  GCCAGTTTAAGAAAAGAGTA  377
            ||||||||||||||||||||
Sbjct  451  GCCAGTTTAAGAAAAGAGTA  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5