BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923283

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfa...   492    1e-138


> AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily 
protein | chr1:24638685-24641494 REVERSE LENGTH=2495
Length=2495

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 379/434 (87%), Gaps = 6/434 (1%)
 Strand=Plus/Plus

Query  1     GTGAGGGGTCATGAGATTGATATGGAATCGAAACTGAAGTTTCAAGGTGGATGTGATATA  60
             ||||| ||||||| ||| ||| ||||||| ||||| |||| ||||||||||||||||| |
Sbjct  2025  GTGAGAGGTCATGGGATAGATTTGGAATCAAAACTCAAGTGTCAAGGTGGATGTGATACA  2084

Query  61    TGGATGGTGAGATGTGTTTGCAGTGCTAGAGATGATGATGGTGAGAGAATGATAGCATGT  120
             |||||||||| |||| ||||||| ||||||||||||||||| ||||| |||||| | |||
Sbjct  2085  TGGATGGTGAAATGTATTTGCAGAGCTAGAGATGATGATGGCGAGAGGATGATATCTTGT  2144

Query  121   GATGTATGTGAGATATGGCAGCACACAAGATGTTGTGGGATTGATGATACAAATACTTTG  180
             ||||| |||||| ||||||| || ||| |||||||||||||||||||| || ||||||||
Sbjct  2145  GATGTTTGTGAGGTATGGCAACATACACGATGTTGTGGGATTGATGATTCAGATACTTTG  2204

Query  181   CCTCCACTTTTTGTTTGTTCTAATTGTTGTGAAGAATTTGCAGAGCAACAGAAGAAAGTG  240
             |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct  2205  CCTCCACTTTTTGTTTGTTCGAATTGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTG  2264

Query  241   TTGCAGCCAAAGTATGAGTTTCCAAGTGCAGAGAATGTGTTTCTGATTGAATCAGGTGAT  300
              |||||||||||||||||||||||||| |||||||||||||| || ||||||| |  |||
Sbjct  2265  CTGCAGCCAAAGTATGAGTTTCCAAGTTCAGAGAATGTGTTTTTGCTTGAATCTGCAGAT  2324

Query  301   GATTACTTTGGAGGAGATGAGAGATCTCTTGGTATGATTTTTCTTGAAGAAAACTTTCTC  360
             |||| |||||||| |  | |||||| ||||||||||||||||| ||||||||||| ||| 
Sbjct  2325  GATTTCTTTGGAG-A--TCAGAGATGTCTTGGTATGATTTTTCCTGAAGAAAACTATCTT  2381

Query  361   TTACAAAACCCCTTTTTGGATCAAACATTGTGGATAAATCAATTCTTTTGTAAATGAAAC  420
             ||  |||  |  |||||||||||||| |||| ||||| ||||||||||||||||  ||||
Sbjct  2382  TTGTAAAGTCAGTTTTTGGATCAAACTTTGTAGATAA-TCAATTCTTTTGTAAACAAAAC  2440

Query  421   -ATGATTGTATATG  433
              |  ||||||||||
Sbjct  2441  CAA-ATTGTATATG  2453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5