BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923288
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49290.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1232 0.0
> AT1G49290.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G13620.1);
Has 99 Blast hits to 93 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18232608-18233624
REVERSE LENGTH=1017
Length=1017
Score = 1232 bits (667), Expect = 0.0
Identities = 910/1024 (89%), Gaps = 29/1024 (3%)
Strand=Plus/Plus
Query 23 ATGGCTTCTCCTTTGTAT-C--C-GTC-T-AACAATCCTTCATCTTCAATTGTGGTGACA 76
|||||||||||||||||| | | ||| | |||||||||| |||||||||||||||||||
Sbjct 1 ATGGCTTCTCCTTTGTATCCGTCTGTCTTAAACAATCCTTTATCTTCAATTGTGGTGACA 60
Query 77 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 120
Query 137 CATCTAAACCGAGACGTGGACCAGTCGTTTCTAGCGATGTGTTTTCTCTTGTTGCTCGAG 196
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 AATCTAAACCGAGACGTTGACCAGTCGTTTCTAGCCATGTGTTTTCTCTTGTTCCTCGAG 180
Query 197 CAATCTGGTTACGCCCGTGACGTTATCGCCTATCTTGTCTCGTTGCCAGACGCTTTCGTT 256
||||| |||| ||||| ||| | ||||| || ||||||||||| ||| ||||||| ||
Sbjct 181 CAATCCAGTTATGCCCGCGACATAATCGCGTACCTTGTCTCGTTACCAAACGCTTTTGTC 240
Query 257 GACGCGGTGGCTAACGAGATCGGTGTGTGTATAAATTTGTTATACAACCTAGA-TTTCGC 315
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 241 GACGCGGTGGCTAACGAAATCGGTGTGTGTATAAATTTGTTATACAACGTAGAGTTT-GC 299
Query 316 ATCTACGTTCTTCGCTGCT-AGCAATGATGATAATTCCATTATACCTTTGCTCTTAAGTA 374
||| ||||||||||||||| | ||| |||||||| ||||| ||||| ||||||||| |||
Sbjct 300 ATCAACGTTCTTCGCTGCTGA-CAACGATGATAACTCCATGATACCATTGCTCTTACGTA 358
Query 375 TGACTGGAGGGAAGTTAACTCTCAGATTAATCAATCAAGACCGCGAAAT-TTTTCGTGTT 433
| |||||||| ||||| ||||||||||| ||||| ||| | ||| ||| |||| | | |
Sbjct 359 TTACTGGAGGAAAGTTTACTCTCAGATTGATCAACCAACAACGCAAAAACTTTT-GCGCT 417
Query 434 GGAGTGTCAAAGAATTGGACCGATGTTGGCACTCGAGCTTTCACAGATTTATGCGAGAGA 493
|||||| |||||| ||||||||||||| |||||||||| ||| ||||||||||||||| |
Sbjct 418 GGAGTGACAAAGAGTTGGACCGATGTTTGCACTCGAGCATTCTCAGATTTATGCGAGACA 477
Query 494 GCTCACATGATCAACAGGGAGAAACT-TCTGGCTTTAGAGAGAGAGAAATTTATTGAGGA 552
||||| | ||||||||||||||||| | |||||||||||||||||||||| || |||||
Sbjct 478 GCTCATAGGATCAACAGGGAGAAACAAT-TGGCTTTAGAGAGAGAGAAATTCATAGAGGA 536
Query 553 CATGAAGAGGCTCAGGTTGAGTCTTCAACAAGAAAACCCTAACAGGTTGAGTGTTCAACA 612
||||||| |||||||||||||| ||||||||||| |||| ||||| ||||| |||||
Sbjct 537 TATGAAGAAACTCAGGTTGAGTCTCCAACAAGAAAAATCTAATAGGTTAAGTGTACAACA 596
Query 613 AGTAAAAATTGCGTCTCCTCCTCCTCCTCGTCCG---------GTTGAAGACGAAACA-A 662
|||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 597 AGTAAAAATTGCTTCTCCTCCTCCTCCTCGTCCTCATCCTCCAGTTGAAGACGAAACAGA 656
Query 663 ACAAGTTCCATAAAGAGAAAGAGATAATGGAGGCAAAAGAGAAGGAAGCG-GTGGTGGCG 721
| ||| || || ||||||||||| |||||||| |||||||||||||| | ||| |||||
Sbjct 657 A-AAGGCCCTTAGAGAGAAAGAGACAATGGAGGTAAAAGAGAAGGAAG-GTGTGCTGGCG 714
Query 722 GCAGATGATCGGACGGTTTTCCTGACGTTTTCGAAAGGGTACCCGATTTCGGAAGCGGAA 781
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 715 GCAGATGATCGGACGGTTTTCCTGACGTTTTCAAAAGGGTATCCGATCTCGGAAGCGGAA 774
Query 782 GTTAGGGTTTACTTTACGAGGAGGTTTGGGGAAGTGATAGAAGCGGTAGAGATGCAGGAA 841
|| ||||||||||| || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 775 GTAAGGGTTTACTTCACTAGGAGATTCGGGGAAGTGATAGAAGCGGTAGAGATGCAAGAA 834
Query 842 GTTGAAGCAAATGAGCAGCCGTTGTTTGCGAAGATGGTGTTGAAACTTAAGTGTGCGTCG 901
||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 835 GTTGAAGCAAACGAGCAGCCATTGTTTGCGAAGATGGTGATGAAACTGCAGTGTGCGTCG 894
Query 902 ATGATGGACCAGATTGTGAGTGCAAGGTCTAGAAACAAGTTCACCATCGATGGCAAACAT 961
|||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 895 ATGATGGATGAGATTGTGAGTGCGAGGTTTAGAAACAAGTTCACCATCGATGGCAAACAT 954
Query 962 GTTTGGGCTCGTAAGTACGTTCGCAAGA-TCCCTTACCCAGCTTCATCCTCTACTCATAT 1020
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
Sbjct 955 GTTTGGGCTCGTAAGTACGTTCGCAAGAATCC-TTATCCAGCTTCATCCTCTACTCATTT 1013
Query 1021 TTGA 1024
||||
Sbjct 1014 TTGA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5