BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923288 Length=1044 Score E Sequences producing significant alignments: (Bits) Value AT1G49290.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1232 0.0 > AT1G49290.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13620.1); Has 99 Blast hits to 93 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18232608-18233624 REVERSE LENGTH=1017 Length=1017 Score = 1232 bits (667), Expect = 0.0 Identities = 910/1024 (89%), Gaps = 29/1024 (3%) Strand=Plus/Plus Query 23 ATGGCTTCTCCTTTGTAT-C--C-GTC-T-AACAATCCTTCATCTTCAATTGTGGTGACA 76 |||||||||||||||||| | | ||| | |||||||||| ||||||||||||||||||| Sbjct 1 ATGGCTTCTCCTTTGTATCCGTCTGTCTTAAACAATCCTTTATCTTCAATTGTGGTGACA 60 Query 77 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 120 Query 137 CATCTAAACCGAGACGTGGACCAGTCGTTTCTAGCGATGTGTTTTCTCTTGTTGCTCGAG 196 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 121 AATCTAAACCGAGACGTTGACCAGTCGTTTCTAGCCATGTGTTTTCTCTTGTTCCTCGAG 180 Query 197 CAATCTGGTTACGCCCGTGACGTTATCGCCTATCTTGTCTCGTTGCCAGACGCTTTCGTT 256 ||||| |||| ||||| ||| | ||||| || ||||||||||| ||| ||||||| || Sbjct 181 CAATCCAGTTATGCCCGCGACATAATCGCGTACCTTGTCTCGTTACCAAACGCTTTTGTC 240 Query 257 GACGCGGTGGCTAACGAGATCGGTGTGTGTATAAATTTGTTATACAACCTAGA-TTTCGC 315 ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || Sbjct 241 GACGCGGTGGCTAACGAAATCGGTGTGTGTATAAATTTGTTATACAACGTAGAGTTT-GC 299 Query 316 ATCTACGTTCTTCGCTGCT-AGCAATGATGATAATTCCATTATACCTTTGCTCTTAAGTA 374 ||| ||||||||||||||| | ||| |||||||| ||||| ||||| ||||||||| ||| Sbjct 300 ATCAACGTTCTTCGCTGCTGA-CAACGATGATAACTCCATGATACCATTGCTCTTACGTA 358 Query 375 TGACTGGAGGGAAGTTAACTCTCAGATTAATCAATCAAGACCGCGAAAT-TTTTCGTGTT 433 | |||||||| ||||| ||||||||||| ||||| ||| | ||| ||| |||| | | | Sbjct 359 TTACTGGAGGAAAGTTTACTCTCAGATTGATCAACCAACAACGCAAAAACTTTT-GCGCT 417 Query 434 GGAGTGTCAAAGAATTGGACCGATGTTGGCACTCGAGCTTTCACAGATTTATGCGAGAGA 493 |||||| |||||| ||||||||||||| |||||||||| ||| ||||||||||||||| | Sbjct 418 GGAGTGACAAAGAGTTGGACCGATGTTTGCACTCGAGCATTCTCAGATTTATGCGAGACA 477 Query 494 GCTCACATGATCAACAGGGAGAAACT-TCTGGCTTTAGAGAGAGAGAAATTTATTGAGGA 552 ||||| | ||||||||||||||||| | |||||||||||||||||||||| || ||||| Sbjct 478 GCTCATAGGATCAACAGGGAGAAACAAT-TGGCTTTAGAGAGAGAGAAATTCATAGAGGA 536 Query 553 CATGAAGAGGCTCAGGTTGAGTCTTCAACAAGAAAACCCTAACAGGTTGAGTGTTCAACA 612 ||||||| |||||||||||||| ||||||||||| |||| ||||| ||||| ||||| Sbjct 537 TATGAAGAAACTCAGGTTGAGTCTCCAACAAGAAAAATCTAATAGGTTAAGTGTACAACA 596 Query 613 AGTAAAAATTGCGTCTCCTCCTCCTCCTCGTCCG---------GTTGAAGACGAAACA-A 662 |||||||||||| |||||||||||||||||||| ||||||||||||||| | Sbjct 597 AGTAAAAATTGCTTCTCCTCCTCCTCCTCGTCCTCATCCTCCAGTTGAAGACGAAACAGA 656 Query 663 ACAAGTTCCATAAAGAGAAAGAGATAATGGAGGCAAAAGAGAAGGAAGCG-GTGGTGGCG 721 | ||| || || ||||||||||| |||||||| |||||||||||||| | ||| ||||| Sbjct 657 A-AAGGCCCTTAGAGAGAAAGAGACAATGGAGGTAAAAGAGAAGGAAG-GTGTGCTGGCG 714 Query 722 GCAGATGATCGGACGGTTTTCCTGACGTTTTCGAAAGGGTACCCGATTTCGGAAGCGGAA 781 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 715 GCAGATGATCGGACGGTTTTCCTGACGTTTTCAAAAGGGTATCCGATCTCGGAAGCGGAA 774 Query 782 GTTAGGGTTTACTTTACGAGGAGGTTTGGGGAAGTGATAGAAGCGGTAGAGATGCAGGAA 841 || ||||||||||| || ||||| || ||||||||||||||||||||||||||||| ||| Sbjct 775 GTAAGGGTTTACTTCACTAGGAGATTCGGGGAAGTGATAGAAGCGGTAGAGATGCAAGAA 834 Query 842 GTTGAAGCAAATGAGCAGCCGTTGTTTGCGAAGATGGTGTTGAAACTTAAGTGTGCGTCG 901 ||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 835 GTTGAAGCAAACGAGCAGCCATTGTTTGCGAAGATGGTGATGAAACTGCAGTGTGCGTCG 894 Query 902 ATGATGGACCAGATTGTGAGTGCAAGGTCTAGAAACAAGTTCACCATCGATGGCAAACAT 961 |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 895 ATGATGGATGAGATTGTGAGTGCGAGGTTTAGAAACAAGTTCACCATCGATGGCAAACAT 954 Query 962 GTTTGGGCTCGTAAGTACGTTCGCAAGA-TCCCTTACCCAGCTTCATCCTCTACTCATAT 1020 |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| | Sbjct 955 GTTTGGGCTCGTAAGTACGTTCGCAAGAATCC-TTATCCAGCTTCATCCTCTACTCATTT 1013 Query 1021 TTGA 1024 |||| Sbjct 1014 TTGA 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51188595793 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5