BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923290

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase ho...   403    5e-112
  AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B ...   302    2e-81 


> AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase 
homolog  G3E | chr1:18234724-18237231 FORWARD LENGTH=1002
Length=1002

 Score =  403 bits (218),  Expect = 5e-112
 Identities = 238/248 (96%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  74   ATATGTGAATAAGAAGTTTAGCAACCAGTATAAGGCGACCATTGGGGCTGATTTCTTGAC  133
            |||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct  199  ATATGTTAATAAGAAGTTCAGCAACCAGTATAAGGCAACTATTGGGGCTGATTTCTTGAC  258

Query  134  TAAGGAAGTGCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCA  193
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  TAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCA  318

Query  194  GGAAAGGTTTCAGAGTCTTGGTGTGGCATTTTATCGTGGTGCTGATTGCTGTGTTCTTGT  253
             ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  319  AGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTATCGTGGTGCTGATTGCTGTGTTCTTGT  378

Query  254  ATATGATGTCAACTCCGCAAAGTCATTTGAGGATCTCAACAACTGGAGGGAAGAGTTTCT  313
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  379  ATATGATGTCAACTCCGCAAAATCATTCGAGGATCTCAACAACTGGAGGGAAGAGTTTCT  438

Query  314  GATCCAGG  321
            ||||||||
Sbjct  439  GATCCAGG  446


 Score = 99.0 bits (53),  Expect = 3e-20
 Identities = 58/60 (97%), Gaps = 1/60 (2%)
 Strand=Plus/Plus

Query  14   GATCTCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGCGATAGCGG  73
            ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  113  GAT-TCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGG  171


> AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B 
| RAB GTPase homolog G3F | chr3:6484068-6486247 FORWARD LENGTH=1061
Length=1061

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 221/249 (89%), Gaps = 4/249 (2%)
 Strand=Plus/Plus

Query  75   TATGTGAATAAGAAGTTTAGCAACCAGTATAAGGCGACCATTGGGGCTGATTTCTTGACT  134
            ||||| ||||| ||||| ||||||||||| ||||| |||||||| || || |||||||| 
Sbjct  280  TATGTTAATAAAAAGTTCAGCAACCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACC  339

Query  135  AAGGAAGTGCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCAG  194
            |||||||| || |||||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct  340  AAGGAAGTACAGTTTGAAGATCGACTTTTCACTTTACAGATCTGGGATACAGCTGGACAG  399

Query  195  GAAAGGTTTCAGAGTCTTGGTGTGGCATTTTATCGTGGTGCTGATTGCTGTGTTCTTGTA  254
            |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||
Sbjct  400  GAAAGGTTTCAGAGCCTTGGTGTAGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTA  459

Query  255  TATGATGTCAACTCC--GCAAAGTCATTTGAGGATCTCAACAACTGGAGGGAAGAGTTTC  312
            ||||||||||| |||  | ||| ||||||||  |||| ||||||||||||||||| ||||
Sbjct  460  TATGATGTCAATTCCATG-AAA-TCATTTGAAAATCTGAACAACTGGAGGGAAGAATTTC  517

Query  313  TGATCCAGG  321
            |||||||||
Sbjct  518  TGATCCAGG  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5