BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923303

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49370.1 | Symbols:  | pseudogene, similar to OSJNBa0072F16....   224    3e-58


> AT1G49370.1 | Symbols:  | pseudogene, similar to OSJNBa0072F16.8, 
blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 
OSJNBa0072F16.8 {Oryza sativa 
(japonica cultivar-group)} | chr1:18275050-18276477 REVERSE 
LENGTH=1428
Length=1428

 Score =  224 bits (121),  Expect = 3e-58
 Identities = 215/256 (84%), Gaps = 24/256 (9%)
 Strand=Plus/Plus

Query  5     AATCTATGCATATCTAATGTATGGAGAAGAGGTGCAATCACAAATTACTTTAAACCTTCC  64
             ||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  953   AATCTTTGGATATCTTATGTATGGAGAAGAGGTGCAATCACAAATCACTTTAAACCTTCC  1012

Query  65    AACTCAT-A-AT--G-GC------AG---------C-GC---GGTGAGCCCGCTAACCAA  100
             ||||||| | ||  | ||      ||         |  |    ||||| |||||||||||
Sbjct  1013  AACTCATAATATCAGCGCGGTGATAGCAATATCTACTACAATCGTGAGTCCGCTAACCAA  1072

Query  101   ATACGCATTAATCCTTTCCCCGATCATGGAAGCAATCAATACACGATTGATTCAAGCAAA  160
             |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1073  ATACGCATTAATTCTTTCCCCGATCATGGAAGCAATCAATACACGATTGATCCAAGCAAA  1132

Query  161   CTACAAAAGGAGAAGCGTCCGGATATCGACCGGAACCGGGCTGGTTTTAGGAACAATATT  220
             ||| |||||||||||| ||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct  1133  CTATAAAAGGAGAAGCCTCCGGATGTTGACTGGAACGGGGCTGGTTTTAGGAACAATATT  1192

Query  221   GATTGTACTTGTTGTG  236
             | ||| ||||||||||
Sbjct  1193  GGTTGCACTTGTTGTG  1208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5