BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923304

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49370.1 | Symbols:  | pseudogene, similar to OSJNBa0072F16....   302    2e-81


> AT1G49370.1 | Symbols:  | pseudogene, similar to OSJNBa0072F16.8, 
blastp match of 42% identity and 6.6e-73 P-value to GP|21739229|emb|CAD40984.1||AL606460 
OSJNBa0072F16.8 {Oryza sativa 
(japonica cultivar-group)} | chr1:18275050-18276477 REVERSE 
LENGTH=1428
Length=1428

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 203/222 (91%), Gaps = 4/222 (2%)
 Strand=Plus/Plus

Query  96   TGTCAGGTGTTGGAATCTTGGCTATTCCTTATGCACTTTCGTCAAGTGGATGGATTAGCA  155
            ||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  207  TGTTAGGTGTTGGAATATTGGCTATTCCTTATGCACTTTCCTCAAGTGGATGGATTAGCA  266

Query  156  TTCTGTTTTTCTTTCTAATTGGAGTAACAACTTGGTACACTGGTTTACTCCTCCGACGTT  215
            |||||||||||||||||||||| ||||||||||||||||| ||||| || |||| |||||
Sbjct  267  TTCTGTTTTTCTTTCTAATTGGTGTAACAACTTGGTACACCGGTTTGCTTCTCCAACGTT  326

Query  216  GCCTCACACTCGACCCTATGGTACTTCGAAGTTACCCTGATCTAGCAAACAAAGCGTT-G  274
            |||||| |||||||||||||||  | || ||||||||||||||||| ||||||||||| |
Sbjct  327  GCCTCAAACTCGACCCTATGGT--T-CGTAGTTACCCTGATCTAGCGAACAAAGCGTTTG  383

Query  275  GGAAGAAAGATCGGGTACTAGCCTCTTTCTTCATATACATCG  316
            ||||||||| |||| || ||| ||||||||||||||||||||
Sbjct  384  GGAAGAAAGGTCGGTTATTAGTCTCTTTCTTCATATACATCG  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14678182708


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5