BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923309

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...   296    1e-79


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score =  296 bits (160),  Expect = 1e-79
 Identities = 208/232 (90%), Gaps = 0/232 (0%)
 Strand=Plus/Plus

Query  80   AGTATTGGAGCAATTGAGATTGACAGAGAAGATGGCAGAACTCCGGATCAGTTGAGACCT  139
            ||||||| |||||| |||||||| ||||||||||| ||||| ||  ||||| ||||||||
Sbjct  111  AGTATTGTAGCAATGGAGATTGATAGAGAAGATGGAAGAACACCAAATCAGCTGAGACCT  170

Query  140  CTTGCTTGTTCTCGTAACATCCTTCATCGTCCTCATGGCTCTGCTAGCTGGTCGCAAGGG  199
            ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  171  CTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGG  230

Query  200  GATACAAAAGTTTTAGCTGCAGTTTATGGACCTAAACCGGGAACTAGGAAGAACGAGAAC  259
            |||||||||||| ||||||| ||||||||||||||| | ||||| |  |||||||| || 
Sbjct  231  GATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGAAAAT  290

Query  260  CCTGAGAAGGCTTGCTTTGAAGTCATATGGAAGCCTAAATCAGGGCAGATTG  311
             ||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  291  GCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAATCCGGGCAGATTG  342


 Score =  257 bits (139),  Expect = 6e-68
 Identities = 177/195 (91%), Gaps = 4/195 (2%)
 Strand=Plus/Plus

Query  311  GTCTTTCCAAATACAACTCTCTCTGTGCTTCCGGAAGGATCATCACTAGTGGAAGGCGAG  370
            |||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||
Sbjct  630  GTCTTTCCAAATACAACTCTCTCTGTTCTTCCGGAAGGGTCATCAGTAGCGGAAGGCGAG  689

Query  371  CCGGTAGAAG-ATGGGATCATTACATTAGTTACCCATGGAGTAATGTCAGTGGACGATTA  429
            || ||||| | |||||||||| |||| | |||| ||||||||||||||||||||||||||
Sbjct  690  CCAGTAGA-GCATGGGATCATCACATCAATTACACATGGAGTAATGTCAGTGGACGATTA  748

Query  430  TTTC-TGGTGTGTAGAGAACGGTCGTGCTGCTACAGCTAGTTTATCTGCCTTTTTTAGGA  488
            |||| || |||||||||||||| ||||||||||| |||||||||||||| |||||||| |
Sbjct  749  TTTCCTG-TGTGTAGAGAACGGCCGTGCTGCTACGGCTAGTTTATCTGCATTTTTTAGAA  807

Query  489  AGAACTTCCAATAAA  503
            ||||||||||| |||
Sbjct  808  AGAACTTCCAACAAA  822



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5