BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923310
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46200.1 | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog... 531 5e-150
> AT3G46200.1 | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog
9 | chr3:16969266-16971204 FORWARD LENGTH=1140
Length=1140
Score = 531 bits (287), Expect = 5e-150
Identities = 535/647 (83%), Gaps = 48/647 (7%)
Strand=Plus/Plus
Query 104 AGGAACGAACTTGAGTTCTCTGTGGGAG-AGCTTCCTTATCACATCACAAGATGACTCTG 162
||||||||| |||||||||||||||||| || |||||| | |||||| ||||||||||||
Sbjct 332 AGGAACGAATTTGAGTTCTCTGTGGGAGAAG-TTCCTTGTTACATCAGAAGATGACTCTG 390
Query 163 TAAGATGTCGACATACCTCAAGTCCATTGGGTAATGGTGCAATTATCGAGACTTCTGACC 222
| ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 391 TTAGATGTCGACACACCTCAAGTCCATTGGGAAATGGTGCAGTTATCGAAACTTCTGATA 450
Query 223 AGAAGCTTATTGTGTTACGCCGGAGTAATAATGTCGGGGAATTCCCAGGTCACTACGTAT 282
||||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 451 AGAAGATTATTGTGTTACGTCGGAGTAATAATGTTGGGGAATTTCCAGGACACTATGTAT 510
Query 283 TTCCTGGTGGCCATCCAGAGCCAATGGCAATAGGAATTGATTCTCATCAGCTTG-AGA-A 340
| ||||| |||||||||||||||| ||| |||| ||||||| ||||||||||| | | |
Sbjct 511 TCCCTGGGGGCCATCCAGAGCCAACAGCAGTAGGTATTGATTATCATCAGCTTGAAAACA 570
Query 341 A-G-----A-TGGTGAGGTTTTAAACAAGAAGGTGACTCAAGAAATGTTTGACAGCATTA 393
| | | ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 571 ATGTTCAAACCGGTGAGGTTTTAAACAAGAAGGTAACTCAAGAAATGTTTGATAGCATTA 630
Query 394 CCCGTGAAGTTGTC---G-AA---GAA-ACTGGCAT-A-C-C---G---G--------CA 428
| ||||||||||| | || ||| || |||| | | | | | ||
Sbjct 631 TCTGTGAAGTTGTCGAAGAAACTGGAATACCAGCATCATCACTTAGCTCGCCTCTCTTCA 690
Query 429 TC---ATCTCTTG-AGGGAGTTGAGAATGCGAGACCAGCTATGTTTTTCTTCATCAGGTG 484
|| || ||| | |||||||| ||||| ||||||||||||||||||| | ||| |||
Sbjct 691 TCGGTATATCTCGAAGGGAGTT--GAATGTAAGACCAGCTATGTTTTTCTACCTCAAGTG 748
Query 485 TAGTCATCATTCAGATGACATTCAAAAACTATACTCTAGTGCTGAAGATGGGTTTGAGTC 544
|||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||
Sbjct 749 TAGTCATCATTCAGATGACATTCAAAGATTATACTCTAGCGCTGAAGATGGGTTCGAGTC 808
Query 545 AACACAGCTCCACACTGTCTCTAT-GGACGAGCTGAAGACGATGACATCAAGAATGCCAG 603
||||||||||||||||||||| || ||| |||||||||| ||||||||| ||||||||||
Sbjct 809 AACACAGCTCCACACTGTCTC-ATTGGATGAGCTGAAGATGATGACATCGAGAATGCCAG 867
Query 604 GTTGCCACCATGGTGGTTTTGGGCTCTACTAATTGATGCTTCAAGGTCTCAAGAACTCTA 663
||||||| ||||| || || | |||||| || ||||||||||| ||||||||||| |||
Sbjct 868 GTTGCCATCATGGCGGATTCGCTCTCTACGAACTGATGCTTCAACGTCTCAAGAACACTA 927
Query 664 ATGAAACA-CATTTAACATCGACCTAAGAGGACGCA-ACTTGAACTT 708
| ||||| | ||||| | | || |||||||| | | |||| |||||
Sbjct 928 AGGAAACGTC-TTTAATAGCAACGTAAGAGGAAG-ATACTTAAACTT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5