BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923313

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50060.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   135    2e-31


> AT1G50060.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr1:18551186-18552578 FORWARD LENGTH=618
Length=618

 Score =  135 bits (73),  Expect = 2e-31
 Identities = 127/152 (84%), Gaps = 7/152 (5%)
 Strand=Plus/Plus

Query  129  AACTATGCGAATTCTAGAAAAGCCGACTGCAATCTTACTCACT-CGACAGGATCACCATA  187
            |||||| | |||| |||||||||||||||||| |||  ||||| | || ||   ||||||
Sbjct  172  AACTATTCAAATTTTAGAAAAGCCGACTGCAACCTTGTTCACTCCAAC-GG---ACCATA  227

Query  188  TGGAGAAAACCTAGCCAAGGGAAGTAGTTCCACGTTCACAGGCG-TATCGGCCGTGAATC  246
            ||||||||||||||||||||||||||||||| ||||| | |||  | |||||||| || |
Sbjct  228  TGGAGAAAACCTAGCCAAGGGAAGTAGTTCCTCGTTCTC-GGCCATCTCGGCCGTCAAAC  286

Query  247  TTTGGGTCGCCGAGAAAAAGTACTACAACTAC  278
            ||||||||| |||||||   ||||||| ||||
Sbjct  287  TTTGGGTCGACGAGAAACCTTACTACAGCTAC  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5