BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923318

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52420.1 | Symbols:  | UDP-Glycosyltransferase superfamily p...   183    5e-46


> AT1G52420.1 | Symbols:  | UDP-Glycosyltransferase superfamily 
protein | chr1:19527842-19531287 FORWARD LENGTH=2611
Length=2611

 Score =  183 bits (99),  Expect = 5e-46
 Identities = 120/130 (92%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  129   GAGGCTACGATTAGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA  188
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2251  GAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA  2310

Query  189   TATGTACAATCGATTCGTTGATGTTCTTATCAAATGCATGAGACCATAAAAAA-CACTTG  247
             ||||||||| |||||||| ||||||||  |||||||||||||||| ||||||| | ||| 
Sbjct  2311  TATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCATGAGACCTTAAAAAAGCCCTTT  2370

Query  248   GATTTACCAA  257
             | ||||||||
Sbjct  2371  G-TTTACCAA  2379


 Score =  163 bits (88),  Expect = 6e-40
 Identities = 113/125 (90%), Gaps = 2/125 (2%)
 Strand=Plus/Plus

Query  1     TTTGGGAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA  60
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2075  TTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA  2134

Query  61    GGAGGAGCAAAAGAGATCGTGCAGCACAATGTGACCGGTTTACTTCACTCAATGGG-ACG  119
             |||||| | |||||||| || || |||||  |||| ||| |||||||||||||||| | |
Sbjct  2135  GGAGGAACCAAAGAGATGGTTCAACACAACATGACTGGTCTACTTCACTCAATGGGGA-G  2193

Query  120   ATCCG  124
             |||||
Sbjct  2194  ATCCG  2198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11712385517


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5