BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923329

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49410.1 | Symbols: TOM6 | translocase of the outer mitochon...   263    5e-70


> AT1G49410.1 | Symbols: TOM6 | translocase of the outer mitochondrial 
membrane 6 | chr1:18285448-18286902 REVERSE LENGTH=501
Length=501

 Score =  263 bits (142),  Expect = 5e-70
 Identities = 172/186 (92%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  23   ATGTTTCCAGGAATGTTCATGCGAAAGCCAGACAAAGCCGTGGCTCTGAAGCAGCTACGG  82
            ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  1    ATGTTCCCAGGAATGTTCATGCGAAAGCCAGACAAAGCCGAGGCTCTGAAGCAGCTACGC  60

Query  83   ACCCATGTGGCTCTTTTTGGCGGCTGGGTTGTCATTGTCCGTGCTGTTCCCTACGTCCTC  142
            || ||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct  61   ACTCATGTCGCTCTTTTTGGCAGCTGGGTTGTCATTATCCGTGCTGCTCCCTACGTCCTC  120

Query  143  TCCTATTTCTCCGATTCCAAAGATGAGCTCAAGATCGACTTCTAAG-G-CTCTT-CGAAT  199
            |||||||||||||||||||||||||||||||||||||| ||||||  | ||||| | |||
Sbjct  121  TCCTATTTCTCCGATTCCAAAGATGAGCTCAAGATCGATTTCTAAATGACTCTTTC-AAT  179

Query  200  TTTCAG  205
            ||||||
Sbjct  180  TTTCAG  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5