BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923336

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59970.1 | Symbols:  | Matrixin family protein | chr1:220735...   350    7e-96


> AT1G59970.1 | Symbols:  | Matrixin family protein | chr1:22073534-22074876 
FORWARD LENGTH=1343
Length=1343

 Score =  350 bits (189),  Expect = 7e-96
 Identities = 222/238 (93%), Gaps = 1/238 (0%)
 Strand=Plus/Plus

Query  162  GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTGCTCGGAGCTGATATAGTGATCGAA  221
            ||||||||||||||||||||||||||||||||| | ||| | || ||||||||||||| |
Sbjct  626  GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGA  685

Query  222  TTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGCTATGGGGACATTAGCG  281
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  686  TTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCG  745

Query  282  CACGCTTCATCTCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC  341
            || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  746  CATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC  805

Query  342  TCTGACGGTGAAATTAGCCGTCGGGT-TTACCGGTGACGTCGGTGGTGGATCTTGAAT  398
            ||| ||||||||||||| |||||| | |||||||||||| ||||||||||||||||||
Sbjct  806  TCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGTGGTGGATCTTGAAT  863


 Score =  211 bits (114),  Expect = 4e-54
 Identities = 144/158 (91%), Gaps = 4/158 (3%)
 Strand=Plus/Plus

Query  2    GGCAAATCGTTAAACCGAGATGCGGGAATCCGGATACGATCGACGGAGTTTCGGAGATGA  61
            |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct  402  GGCAAATCGTTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTTTCGGAGATGA  461

Query  62   ACGGTGG-AAGAAAGCTTCGTACGAC-GAAGCGGTACTCGTTTTTCCCCGGGAAGCCATG  119
            ||||||| |||| | || |||||||| || |   |||||||||||||||||||||||| |
Sbjct  462  ACGGTGGTAAGATA-CTCCGTACGACTGA-GAAATACTCGTTTTTCCCCGGGAAGCCACG  519

Query  120  GTGGCCGAAACGGAAACGAGATCTGACTTACGCGTTTG  157
            |||||||||||||||||||||||||||||| |||||||
Sbjct  520  GTGGCCGAAACGGAAACGAGATCTGACTTATGCGTTTG  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5