BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923351

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28280.1 | Symbols:  | pseudogene, sterol desaturase domain-...   316    5e-86


> AT5G28280.1 | Symbols:  | pseudogene, sterol desaturase domain-containing 
protein, CER1-like, A.thaliana, ATCER1L19; blastp 
match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 
CER1 {Oryza sativa} | chr5:10261017-10263283 
FORWARD LENGTH=2267
Length=2267

 Score =  316 bits (171),  Expect = 5e-86
 Identities = 223/246 (91%), Gaps = 11/246 (4%)
 Strand=Plus/Plus

Query  21   ATGGCGTCAAGGTCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGTTTCAAG  80
            |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG  60

Query  81   TACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG  140
            |   ||||||| |||||||||  ||| |||||||||||||| ||||||||||||||||||
Sbjct  61   T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG  117

Query  141  GAGGAGAAGGACCTA-GCGAGACTGATGATAGTGGCGCTGATGCTGTGGATAGT-T-CAC  197
            ||||||||||||||| | |||||| |||||||||||| |||||||||||| | | | |||
Sbjct  118  GAGGAGAAGGACCTATG-GAGACTAATGATAGTGGCGATGATGCTGTGGAGAATATTCAC  176

Query  198  AGCCAGATATGGATCAGTGTGTCGCGTCATACACAAGACGGCCAAGGGAAGGAAGAAGAT  257
            |||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||
Sbjct  177  AGCCAGATATGGATCAGTGTGTCGCGTCA--CA-A-GACGGCCAAGGGAAGGAAGAAGAT  232

Query  258  CGTGGA  263
            ||||||
Sbjct  233  CGTGGA  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5