BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923354
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 414 4e-115
AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-... 292 2e-78
AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 122 3e-27
> AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily
| chr1:415079-418010 FORWARD LENGTH=2173
Length=2173
Score = 414 bits (224), Expect = 4e-115
Identities = 382/452 (85%), Gaps = 35/452 (8%)
Strand=Plus/Plus
Query 173 GACGGCCAAGGGAAGGAAGAAGATCGTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCG 232
|||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 288 GACGGCTAAGGGAACGAACAAGATCGTGGACAAGCCCATTGAGTTTGAGCAAGTGGACCG 347
Query 233 AG-G-GC-CTTGGGACGACCAAATCATCTTCAACACGCTCTTCATGTTTCTTGTC-AACA 288
|| | || |||||||||||||| ||||||||||||| ||| |||||| ||| | | ||||
Sbjct 348 AGAGCGCACTTGGGACGACCAAGTCATCTTCAACACTCTCCTCATGTATCTCG-CAAACA 406
Query 289 ACAAACTCTCAGGCTG-CT-CC-CGTATCCCTCTC-TGGAGACTAGACGGAGCCATTCTC 344
||| ||| ||||| | || || | | |||| | | ||||| |||||||| ||||| |||
Sbjct 407 TCAAGCTCCCAGGC-GCCTCCCACCT-TCCC-C-CATGGAGGCTAGACGGGGCCATCCTC 462
Query 345 ATGAGTCATGACTATACTTCATGCTGGTCCCGTCCAG-TTCTTATACTAGTGGTTCCACA 403
||| | | | | ||||||| |||||||||||| || ||| | ||||| ||||| ||||
Sbjct 463 ATG-G-C-T--C--TACTTCACGCTGGTCCCGTCGAGTTTC-TCTACTACTGGTTTCACA 514
Query 404 GAGCTCTCCACCAGCACTTCCTGATCTACTCTCGCTACCATTCTCACCACCACTCCTCCA 463
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 515 GAGCTCTCCACCACCATTTCC---TCTACTCTCGCTACCATTCTCACCACCACTCCTCCA 571
Query 464 TCGTCACCGAGCCCATCACAACTTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGC 523
| ||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 572 TTGTCACCGAGCCCATCACG--T---C---TGTGGTGCACCCCTTCGCCGAGCACATCGC 623
Query 524 CTACTCACTACT-TTTCGCCATACTTATAGTAACGGCGTCCCTGTGTGGGATCCTCTCCA 582
|||| ||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 624 CTACACACTACTCTTT-GCCATACCTATGGTAACGGCGTCCCTGTGTGGGATCCTCTCCA 682
Query 583 TTGTTACCTTCGTTGCATACGTTACTTACATT 614
| ||| || || | | |||| |||||||||||
Sbjct 683 TCGTTTCCATCATGGGATACATTACTTACATT 714
Score = 195 bits (105), Expect = 6e-49
Identities = 150/172 (87%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 2 CTACCTCAAATACCTTTGGATGGCGTCAAGGTCGGGAGTTCTAACGGAATGGCCATGGAG 61
||| ||||| ||||||||||||||||| ||| | |||| ||| ||||| |||||||||||
Sbjct 57 CTAGCTCAAGTACCTTTGGATGGCGTCGAGGCCCGGAGCTCTTACGGAGTGGCCATGGAG 116
Query 62 TCCCCTTGGTGGCTTCAAGTACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTC 121
|||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct 117 TCCCCTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTC 176
Query 122 GTACGTGACAGCTGAGGAGGAGGAGAAGGAGCT-AGCGAGACTGATGATAGT 172
||||||||| |||| ||| |||||||| || || ||| ||||| ||||||||
Sbjct 177 GTACGTGACGGCTGTGGATGAGGAGAAAGACCTCAGC-AGACTTATGATAGT 227
> AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-containing
protein, CER1-like, A.thaliana, ATCER1L19; blastp
match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746
CER1 {Oryza sativa} | chr5:10261017-10263283
FORWARD LENGTH=2267
Length=2267
Score = 292 bits (158), Expect = 2e-78
Identities = 250/290 (86%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 198 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGGGC---CTTGGGACGACCAAATC 254
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 263 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCAATCTTGGGACGACCAAATC 322
Query 255 ATCTTCAACACGCTCTTCATGTTTCTTGTCAACAACAAACTCTCAGGCTGCTCCCGTATC 314
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||
Sbjct 323 ATCTTCAACACGCTCTTCATGTATCTCGTCAACAACAAACTCCCAGGCTGCTCGCGTATC 382
Query 315 CCTCTCTGGAGACTAGACGGAGCCATTCTCATGAG-T-CATGACTATACTTCATGCTGGT 372
|||| | || | | | |||| | ||| | | | | ||| |||||||||| |
Sbjct 383 CCTCCCA--AG-C----C--A-CCAT-C--ATGTGCTTCTTTTCTA--CTTCATGCTGTT 427
Query 373 CCCGTCCAGTTCTTATACTAGTGGTTCCACAGAGCTCTCCACCAGCACTTCCTGATCTAC 432
|||||| ||||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 428 CCCGTCGAGTTCTTATACTACTGGTTCCACAGATCTCTCCACCACCACTTCCT---CTAC 484
Query 433 TCTCGCTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATCAC 482
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TCTCGTTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATCAC 534
Score = 202 bits (109), Expect = 4e-51
Identities = 128/137 (93%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 478 ATCACAACTTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCACTACTTT 537
|||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 602 ATCA-AAATTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCAGTACTCT 660
Query 538 TCGCCATACTTATAGTAACGGCGTCCCTGTGTGGGATCCTCTCCATTGTTACCTTCGTTG 597
||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 661 TCGCCATACCCATAGTAACGGTGTCCCTATGTGGGATCCTCTCCATTGTTCCCTTCGTTG 720
Query 598 CATACGTTACTTACATT 614
|||||||||||||||||
Sbjct 721 CATACGTTACTTACATT 737
Score = 196 bits (106), Expect = 2e-49
Identities = 139/154 (90%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 21 ATGGCGTCAAGGTCGGGAGTTCTAACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 80
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 60
Query 81 TACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG 140
| ||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 61 T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG 117
Query 141 GAGGAGAAGGAGCTA-GCGAGACTGATGATAGTG 173
||||||||||| ||| | |||||| |||||||||
Sbjct 118 GAGGAGAAGGACCTATG-GAGACTAATGATAGTG 150
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 173 GACGGCCAAGGGAAGGAAGAAGATCGTGGA 202
||||||||||||||||||||||||||||||
Sbjct 209 GACGGCCAAGGGAAGGAAGAAGATCGTGGA 238
> AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily
| chr2:15810581-15814208 REVERSE LENGTH=1874
Length=1874
Score = 122 bits (66), Expect = 3e-27
Identities = 229/302 (76%), Gaps = 33/302 (11%)
Strand=Plus/Plus
Query 194 GATCGTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAG---G-GCCTTGGGACGACC 249
|||| || ||||| |||| ||||| || ||||| ||||||| | || |||||||| |
Sbjct 254 GATCCTGAACAAGTCCATAGAGTTTGACCAAGTTGACCGAGAACGAACC-TGGGACGATC 312
Query 250 AAATCATCTTCAACACGCTCTTCA-TGTTT-CTT-GTCAACAACAAAC-TCTCA-GG--C 302
| ||||||||||||| ||| ||| ||||| ||| ||| | || ||||| || |
Sbjct 313 AGATCATCTTCAACA--CTC-TCATTGTTTACTTAACCAA-AGTGTACGTCTCAGGGACC 368
Query 303 TGCTCCCGTATCCCTCTCTGGAG-ACTAGACGGAGCCATTCTCATGAGTCATGACTATAC 361
| | || | ||||| ||||| | || || |||| | ||| | |||| | || | |
Sbjct 369 AG-TACCAT-TCCCT-TCTGGCGAAC-CGATGGAGTGA-TCT--T-AGTC--G-CTCTCC 417
Query 362 TTCATGCTGGTCCCGTCCAGTTCTTATACTAGTGGTTCCA-CAGAGCTCTCCACCAGCAC 420
| ||||||||||| || ||||| | ||||| ||||| || | |||| || ||||| |||
Sbjct 418 TCCATGCTGGTCCGGTGGAGTTCATCTACTACTGGTTTCATC-GAGCCCTTCACCACCAC 476
Query 421 TTCCTGATCTACTCTCGCTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATC 480
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 477 TTCC---TCTACTCTCGCTACCATTCTCACCACCATTCCTCCATTGTCACCGAGCCGATC 533
Query 481 AC 482
||
Sbjct 534 AC 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5