BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923356

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28280.1 | Symbols:  | pseudogene, sterol desaturase domain-...   124    5e-28
  AT1G02190.1 | Symbols:  | Fatty acid hydroxylase superfamily | ...   117    8e-26


> AT5G28280.1 | Symbols:  | pseudogene, sterol desaturase domain-containing 
protein, CER1-like, A.thaliana, ATCER1L19; blastp 
match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 
CER1 {Oryza sativa} | chr5:10261017-10263283 
FORWARD LENGTH=2267
Length=2267

 Score =  124 bits (67),  Expect = 5e-28
 Identities = 84/92 (91%), Gaps = 2/92 (2%)
 Strand=Plus/Plus

Query  53    TCCACCACACAAAATCATAGAGGTAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAGAGT  112
             |||| || ||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct  1594  TCCATCA-ACAAAATCATAGATGCAGCTATCCTTGAAGCAGATGAACAGGGTGTGAGAGT  1652

Query  113   AATGAGTCTTGGCCTGATGAATAATCTGAAGG  144
             ||||||||||||||||||||| ||| | ||||
Sbjct  1653  AATGAGTCTTGGCCTGATGAACAATGT-AAGG  1683


 Score = 60.2 bits (32),  Expect = 1e-08
 Identities = 39/42 (93%), Gaps = 1/42 (2%)
 Strand=Plus/Plus

Query  22   TGGCGTC-AAATATGTTGAAGGTTCCACTCGCTCCACCACAC  62
            |||| || |||||||||||||||||||||||||||| |||||
Sbjct  898  TGGCATCAAAATATGTTGAAGGTTCCACTCGCTCCATCACAC  939


> AT1G02190.1 | Symbols:  | Fatty acid hydroxylase superfamily 
| chr1:415079-418010 FORWARD LENGTH=2173
Length=2173

 Score =  117 bits (63),  Expect = 8e-26
 Identities = 78/85 (92%), Gaps = 1/85 (1%)
 Strand=Plus/Plus

Query  53    TCCACCACACAAAATCATAGAGGTAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAGAGT  112
             |||| || |||  |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  1228  TCCATCA-ACACTATCATAGAGGAAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAAAGT  1286

Query  113   AATGAGTCTTGGCCTGATGAATAAT  137
             ||||||||||||||||||||| |||
Sbjct  1287  AATGAGTCTTGGCCTGATGAACAAT  1311



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5