BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923360
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr... 1138 0.0
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptiona... 479 2e-134
> AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1:18314178-18316645
REVERSE LENGTH=1598
Length=1598
Score = 1138 bits (616), Expect = 0.0
Identities = 667/692 (96%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 18 CTTATGGAAATGGATTCCGCACAGAATCAGTTTAACAAACGTGCTCGATTGTTTGAAGAC 77
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 497 CTTATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGAT 556
Query 78 CCTCAAGACAAAGATGCTAAGGTCATTTATCCATCGAACCCTGGATCTACTGAAGCGGCG 137
||| || ||||||||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 557 CCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTGAATCTACTGAACCAGTG 616
Query 138 AATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAA 676
Query 198 GAAACGCCCAAGGTACTTaagaagagaggaaggaagaagaagaaTCCTAATCCCGAGGAA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GAAACGCCCAAGGTACTTAAGAAGAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAA 736
Query 258 GTAAACTCTTCAACTCCGGGTGGAGATGACTCAGAGAACCGTTCAAAGTTCTACGAGAGT 317
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 737 GTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGT 796
Query 318 GCTTCTGCTAGAAAGAGAACTGTAACCGCAGAGGAAAGAGAGCGAGCCGTCAATGCAGCC 377
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 797 GCTTCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCC 856
Query 378 AAAACATTCGAACCAGCCAATCCTTACTTTCGAGTTGTTCTGCGACCATCATATCTATAC 437
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 857 AAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGCGACCATCATATCTATAC 916
Query 438 AGAGGCTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAGTACCTAAGCGGGATATCT 497
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 917 AGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCT 976
Query 498 GGTTTCATCAAGCTCCAGCTCGGTGAGAAACAATGGCCAGTGAGGTGCCTCTATAAAGCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 977 GGTTTCATCAAGCTCCAGCTCGGTGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCA 1036
Query 558 GGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAA 1096
Query 618 GGAGATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCATTCT-GAAAGTCACCGC 676
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 1097 GGAGATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAA-GTCACCGC 1155
Query 677 CTTTCGTGTCAATGAATATGTGTGACCAAAAA 708
||||||||||||||| ||||||||||||||||
Sbjct 1156 CTTTCGTGTCAATGAGTATGTGTGACCAAAAA 1187
> AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
factor family protein | chr3:6548869-6551853 REVERSE LENGTH=1519
Length=1519
Score = 479 bits (259), Expect = 2e-134
Identities = 425/504 (84%), Gaps = 16/504 (3%)
Strand=Plus/Plus
Query 211 TACTTaagaagagaggaaggaagaagaagaaTCCTAATCCCGAGGAAGTAAACTCTTCAA 270
||| ||| |||||||| ||||||||||| ||| || |||| |||||| ||||||| |||
Sbjct 821 TACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAG 880
Query 271 CTCCGGGTGGA-GATGACT-CAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCTAG 328
||||| | || ||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 881 CTCCGCG-AGATGATGA-TCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAG 938
Query 329 AAAGAGAACTGTAACCGCAGAGGAAAGAGAGCGAGCCGTCAATGCAGCCAAAACATTCGA 388
||||||||| || || ||||| ||||||||| ||||| |||||||||||||||| |||||
Sbjct 939 AAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGA 998
Query 389 ACCAGCCAATCCTTACTTTC-GAGTTGTTCTGCGACCATCATATCTATACAGAGGCTGCA 447
|||| | || |||| ||| | |||| |||||||||||||| |||||||||||||| ||||
Sbjct 999 ACCAACAAACCCTTTCTT-CAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCA 1057
Query 448 TCATGTA-CTTGCCATCTGGGTTTGCTGAGAAGTACCTAAGCGGGATATCTGGTTTCATC 506
||||||| ||| || |||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 1058 TCATGTATCTT-CCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATC 1116
Query 507 AA-GCTCCAGCTCG-GTGAGAAACAATGGCCAGTGAGGTGCCTCTATAAAGCAGGGAGAG 564
|| | ||||||| | | |||||||||||||| || | || ||||| ||||| |||||||
Sbjct 1117 AAAG-TCCAGCTTGCG-GAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAG 1174
Query 565 CTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAA-TATAGGCGAAGGAGAT 623
| || || || ||||||||||| || ||||| || |||||||| | |||| ||||||||
Sbjct 1175 CCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACT-TAGGAGAAGGAGAC 1233
Query 624 GTATGTGTGTTTGAGCTACTCAGAACTCGG-GATTTCATTCTGAAAGTCACCGCCTTTCG 682
|| |||||||||||||| |||||||| | | |||||| || ||||||| || ||||||||
Sbjct 1234 GTCTGTGTGTTTGAGCTGCTCAGAAC-CAGAGATTTCGTTTTGAAAGTGACAGCCTTTCG 1292
Query 683 TGTCAATGAATATGTGTGACCAAA 706
||||| || || || ||| ||||
Sbjct 1293 AGTCAACGAGTACGTCTGAACAAA 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5