BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923362

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis...   488    2e-137


> AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G22530.1); 
Has 77 Blast hits to 77 proteins in 12 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510908-8511928 
FORWARD LENGTH=1021
Length=1021

 Score =  488 bits (264),  Expect = 2e-137
 Identities = 310/332 (93%), Gaps = 4/332 (1%)
 Strand=Plus/Plus

Query  64   TCAGAAGCTGACGTGGCAGTTGAAGAGAGTCATGATTGCTTCAGGTTCGTCGCGGAAACG  123
            ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  214  TCAGACGCTGACGTGGCTGTTGAAGAGAGTCATGACTGCTTCAGGTTCGTCGCGGAAACA  273

Query  124  GATGGTGGTGGAGGAGGAGGTGTG-GGAGCTTACATGGTTGAGATTCATCCTGGTGTGGT  182
            || || || ||||||||||||||| || ||||||||||||||||||||||||||||||  
Sbjct  274  GACGGGGGAGGAGGAGGAGGTGTGAGG-GCTTACATGGTTGAGATTCATCCTGGTGTGAC  332

Query  183  CAAGATTCTGGTGAGAACCAATGGTTCTTCGTCTCTTGGTTTGTCGCTTGATGAGCTTGA  242
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  333  CAAGATTCTTGTGAGAACCAATGGTTCATCGTCTCTTGGTTTGTCGCTTGATGAGCTTGA  392

Query  243  GCTTGACGTGTGGCGTTTTAGGCTACCGGAATCAACTAGGCCTGATCTAGTGACCGTGGA  302
            |||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct  393  GCTTGACGTGTGGCGTTTCAGGCTACCGGAATCAACTAGGCCTGAGCTCGTTACCGTGGA  452

Query  303  TTGCGACGGTGATGGAGAATTGATTATCACTGTGCCTAAGATTGAAGACAACT-CTAGAG  361
            ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |  |||||
Sbjct  453  TTGCGACGGCGATGGAGAATTGATTGTCACTGTGCCTAAGATTGAAGACAA-TGGTAGAG  511

Query  362  ATTTGATAGTGCTTGTACAGTAATCTAATGTG  393
            ||||||||||||||||||||||||||||||||
Sbjct  512  ATTTGATAGTGCTTGTACAGTAATCTAATGTG  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5