BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923365
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49530.1 | Symbols: GGPS6 | geranylgeranyl pyrophosphate syn... 1567 0.0
> AT1G49530.1 | Symbols: GGPS6 | geranylgeranyl pyrophosphate synthase
6 | chr1:18332429-18333689 FORWARD LENGTH=1261
Length=1261
Score = 1567 bits (848), Expect = 0.0
Identities = 985/1052 (94%), Gaps = 6/1052 (1%)
Strand=Plus/Plus
Query 8 CTGTAAGATTATCATCATGAGGCATCGTTACACTCTGGTTCTGTCTGCAATGCGGCTGAT 67
|||||| || ||||||||| ||| ||||||| |||| ||||||||||||||||||| ||
Sbjct 85 CTGTAACATAATCATCATGCGGCCGCGTTACAGTCTGATTCTGTCTGCAATGCGGCTAAT 144
Query 68 ACGACCGTCCAACCGCCGCCATCTAACTTCGATCGCAAGCCCCGACTCTGAGTTCATTTC 127
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 145 ACGACCGTCCAACCGCCG---TCTAAGTTCGATCGCAAGCTCCGACTCTGAGTTCATTTC 201
Query 128 ATATATGAACAATAAGGCTAAGTCCATCAATAAAGCACTAGACGATTCCATTCCTCTTTG 187
||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 202 ATACATGAAGAATAAGGCTAAGTCCATCAACAAAGCACTAGACAATTCAATTCCTCTTTG 261
Query 188 CAACAATTCCGTTCCTCTTTGGGAGCCAGTACTCGAGGTTCGCGAAGCTATGAGGTACAC 247
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 262 CAACAATTTTGTTCCTCTTTGGGAGCCAGTACTCGAGGTTCACAAAGCTATGAGGTACAC 321
Query 248 GCTTCTCTCAGGCGGGAAACGAGTAAGGCCAATGCTTTGTTTGGTCGCTTGCGAGCTCGT 307
||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 322 GCTTCTCCCAGGCGGAAAACGAGTAAGGCCAATGCTCTGTTTGGTCGCTTGCGAGCTCGT 381
Query 308 AGGTGGCCAAGAGTCAACAGCAATGCCTGCAGCCTGTGCAGTTGAGATGATTCACGCTTC 367
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 382 AGGTGGCCAAGAGTCAACCGCAATGCCAGCAGCCTGTGCGGTTGAGATGATTCACGCAGC 441
Query 368 GTCGCTTATCCTAGACGACCTTCCTTGCATGGATGACGACAGCCTCCGCCGTGGAAAACC 427
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 442 GTCGCTCATCCTAGACGACCTTCCTTGTATGGATGACGACAGCCTCCGCCGTGGAAAACC 501
Query 428 CACCAACCATAAAGTCTTTGGCGAGAAAACAGCCATCTTGGCCGCTAATGCCCTTATGTC 487
||||||||||||||| ||||||||||||||| ||||||||||| ||||||| || | |||
Sbjct 502 CACCAACCATAAAGTTTTTGGCGAGAAAACATCCATCTTGGCCTCTAATGCGCTCAGGTC 561
Query 488 TTTGGCGGTCGAGCAGACGTTGGCATCAACCTCATTGGGGGTGACTTCAGAAAGGGTTCT 547
|||||| ||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 562 TTTGGCCGTCAAGCAGACATTGGCATCGACCTCATTGGGGGTGACTTCAGAGAGGGTTCT 621
Query 548 TCGGGCTGTTCAGGAGATGGCGAGAGCTGTTGGGATAGAGGGACTTGTGGCAGGCCAAGC 607
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 622 TCGGGCTGTTCAGGAGATGGCGAGAGCTGTTGGGACAGAGGGACTTGTGGCAGGCCAAGC 681
Query 608 AGCAGATTTGGCCGGAGGAAGGATGAGTTTTGAG-ACAGAAGACGAGGGATTGAGATATC 666
||| ||||||||||||| ||||||||||||| || || |||||||| | |||||||||||
Sbjct 682 AGCGGATTTGGCCGGAGAAAGGATGAGTTTTAAGAAC-GAAGACGACGAATTGAGATATC 740
Query 667 TTGAGTTCATTCATATTCATAAAACCGCGGTTTTGGTTGAAGCTGCGGCTGTTGTGGGAG 726
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGAGTTGATGCATGTTCATAAAACCGCGGTTTTGGTTGAAGCTGCGGCTGTTGTGGGAG 800
Query 727 CTATAATGGGAGGTGGGTCCGATGAAGAGATTGAGAGGCTTAAGAGCTACGCGAGATGCG 786
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 801 CTATAATGGGAGGTGGGTCTGATGAAGAGATTGAGAGGCTTAAGAGCTACGCGAGGTGCG 860
Query 787 ATGGACTGATGTTTCAGGTGATGGATGATGTGCTTGATGAGACCAAGTCGTCCGAGGAGC 846
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 861 TTGGACTGATGTTTCAGGTGATGGATGATGTACTCGATGAGACCAAGTCTTCCGAGGAGC 920
Query 847 TTGGGAAAACTGCCGGAAAAGATTTGATCACCGGAAAGCTTACTTATCCGAAGGTGATGG 906
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 921 TTGGGAAAACTGCCGGTAAAGATTTGATCACCGGAAAGCTGACGTATCCGAAGGTGATGG 980
Query 907 GTGTGGAGAATGCGAGAGAATATGCAAAGAGGTTGAACAGAGAAGCGCAGGAACATCTTC 966
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GTGTGGACAATGCGAGAGAATATGCAAAGAGGTTGAACAGAGAAGCGCAGGAACATCTTC 1040
Query 967 AGGGGTTTGATTCTGACAAGGTGGTTCCTTTGTTGTCTCTCGCTGATTATATTGTCAAGA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 AGGGGTTTGATTCTGACAAGGTGGTTCCTTTGTTGTCTCTCGCTGATTATATTGTCAAGA 1100
Query 1027 GACAAAACTGACTGTTACTCCATAGCTTTAAT 1058
|||||||||||||||| | ||||||||| |||
Sbjct 1101 GACAAAACTGACTGTTGCACCATAGCTT-AAT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5