BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923385
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49640.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1334 0.0
AT1G49650.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 717 0.0
> AT1G49640.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:18375538-18376729 REVERSE LENGTH=1192
Length=1192
Score = 1334 bits (722), Expect = 0.0
Identities = 907/996 (91%), Gaps = 13/996 (1%)
Strand=Plus/Plus
Query 1 CACTCTTTTTTCCAAAGAAGATGGAATCTGATAGAACAACAGAGCATCATCTACCATTCA 60
|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 66 CACTCTCTTTTCCAAAGAAGATGGAATCTGATCTAACCACAGAGCATCATCTACCATTCA 125
Query 61 TCCGGTTTCTA-AAGAACGGCCGGGTCGAGCGACTTAGCGGCAACGACATCAAACCTTCG 119
|||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 126 TCCGAATTC-ATAAGAACGGCCGAGTCGAGCGGCTTAGCGGCAACGACATCAAACCAACG 184
Query 120 TCTTTAAACCCACAAAACGACGTCGTTTCAAAAGACGTCGTATACTCACCGGAGCACAAC 179
|||||||||||||||||||| |||||||| ||||||||| | |||||| |||| ||||||
Sbjct 185 TCTTTAAACCCACAAAACGATGTCGTTTCGAAAGACGTCATGTACTCATCGGACCACAAC 244
Query 180 CTCTCCGTTCGTATGTTTCTCCCCAACAAATCTACAAAACTCGCCACCGCGGGTAA-AAA 238
|||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| |||
Sbjct 245 CTCTCCGTCCGTATGTTTCTCCCCAACAAATCTAGAAAACTCGACACCGCCGGTAACAAA 304
Query 239 ACTACCTCTACTTATCTACTTTCACGGCGGAGCTTACATCATACAATCTCCTTTCTCTCC 298
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 A-TACCTCTACTCATCTACTTTCACGGCGGAGCTTACATCATACAATCTCCTTTCTCTCC 363
Query 299 GGTTTACCATAACTACATCACGGAGGTTGTTAAAACCGCTAACTGCCTCGCCGTGTCGGT 358
|||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 364 GGTTTACCATAACTACCTCACGGAGGTTGTTATAACCGCTAACTGCCTAGCCGTGTCGGT 423
Query 359 TCAATACCGTCTTGCGCCAGAGCATCCAGTTCCGGCGGCTTATGATGATTCATGGTCGGC 418
||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct 424 TCAGTACCGTCTTGCGCCAGAGCATCCGGTTCCGGCGGCTTACGACGATTCATGGTCTGC 483
Query 419 TATTCAGTGGATCTTTTCTCATTCTGATGATTGGATTAATGAATACGCCGATTTCGACAG 478
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 GATTCAGTGGATCTTTTCTCATTCTGATGATTGGATTAATGAATACGCTGATTTCGACAG 543
Query 479 AGTTTTTATCGCCGGAGATAGCGCCGGAGCCAATATATCACATCACATGGGAATAAGAGC 538
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 544 AGTTTTTATCGCCGGAGATAGTGCCGGAGCCAATATATCGCATCACATGGGAATAAGAGC 603
Query 539 TGGTGAGGAGAAGCTTAAGCC-TGGAATCAAAGGGATTGTTATGGTGCATCCAGGTTTTT 597
|||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 604 TGGTAAGGAGAAGCTTA-GCCCTACAATCAAAGGGATTGTTATGGTGCATCCAGGTTTTT 662
Query 598 GGGGGAAAGATCCGATCGACGTACACGATGTGCAAGACAGAGAAATAAGGAGTA-GAATC 656
|||||||||| |||||||||| ||||||||| |||||| ||||| | || | | || ||
Sbjct 663 GGGGGAAAGAACCGATCGACGAACACGATGTACAAGACGGAGAAGTCAGAAACAAGA-TC 721
Query 657 ACACATATTTGGGAAAAGATCGTGAGCCCTAGTAGTGTTGATGGGGCGAATGATCCGTGG 716
|| ||||||||||||| ||||| ||||| | |||||||||||| | |||||||||||||
Sbjct 722 GCATATATTTGGGAAAATATCGTTAGCCCGAATAGTGTTGATGGAGTGAATGATCCGTGG 781
Query 717 TTAAATGTGGTTGGATCCGGGTCGGATGTTTCCGAGATGGGATGTGAGAAGGTTTTGGTT 776
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 782 TTTAATGTTGTTGGATCCGGATCGGATGTTTCCGAGATGGGATGTGAAAAGGTTTTGGTT 841
Query 777 GCGGTGGCCGGGAAAGATGTGTTTTGGCGGCAAGGATTGGCTTACGCGGCGAAGTTGGAG 836
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 842 GCGGTTGCCGGAAAAGATGTGTTTTGGCGGCAAGGATTGGCTTATGCGGCGAAGCTGGAG 901
Query 837 AAGAGTGAGTGGAAAGGAACCGTGGAAGTGGTGGAAGACGAAGAGGAAGGACACTGCTTC 896
|||||| |||||||||||| || || ||| | || || |||||||||||||||||||||
Sbjct 902 AAGAGTCAGTGGAAAGGAAGTGTTGAGGTGATTGAGGAAGAAGAGGAAGGACACTGCTTC 961
Query 897 CATCTCCATAACCCTATTTCTCAAAACGCTTCGAAATTGATG-AGGAAATTTGTGGAGTT 955
||||||||||||| || ||||||||| ||||||||||||||| || || ||| |||||||
Sbjct 962 CATCTCCATAACCATAATTCTCAAAATGCTTCGAAATTGATGCAG-AAGTTTTTGGAGTT 1020
Query 956 TATCATCTTAAGTTGAATCTTGATGCTCAAGCATGG 991
|||||| |||||||||||||||||||||| ||||
Sbjct 1021 TATCAT---AAGTTGAATCTTGATGCTCAAGTATGG 1053
> AT1G49650.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:18377252-18378634 REVERSE LENGTH=1383
Length=1383
Score = 717 bits (388), Expect = 0.0
Identities = 716/869 (82%), Gaps = 44/869 (5%)
Strand=Plus/Plus
Query 120 TCTTTAAACCCACAAAACGACGTCGTTTCAAAAGACGTCGTATACTCACCGGAGCACAAC 179
||| ||||||||| |||||||||||||||||||||||| || |||||||||| ||| |||
Sbjct 412 TCTCTAAACCCACGAAACGACGTCGTTTCAAAAGACGTTGTCTACTCACCGGGGCATAAC 471
Query 180 CTCTCCGTTCGTATGTTTCTCCC-CAACAAATCTACAAAACTCGCCACCGCGGGTAAAAA 238
|||||||||||| | |||||||| | ||||||| ||| |||||| |||| ||||| ||
Sbjct 472 CTCTCCGTTCGTCTCTTTCTCCCTC-ACAAATCAACACAACTCG---CCGCCGGTAACAA 527
Query 239 ACTACCTCTACTTATCTACTTTCACGGCGGAGCTTACATCATAC-AATCTCCTTTCTCTC 297
||| ||||||||||||||||| ||||||||||||| || | || |||| |||||||| |
Sbjct 528 ACTCCCTCTACTTATCTACTTCCACGGCGGAGCTTGGAT-AAACGAATCCCCTTTCTCCC 586
Query 298 CGGTTTACCATAACTACATCACGGAGGTTGTTAAAACCGCTAACTGCCTCGCCGTGTCGG 357
| | ||||| || | | |||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 587 CAATCTACCACAATTTCCTCACGGAGGTAGTTAAATCCGCTAACTGCCTCGCCGTCTCGG 646
Query 358 TTCAATACCGTCTTGCGCCAG-AGCATCCAGTTCCGGCGGCTTATGATGATTCATGGTCG 416
|||||||||| | ||| || | || |||| |||||||| || ||||| ||| |||||||
Sbjct 647 TTCAATACCGCCGTGCACCGGAAG-ATCCGGTTCCGGCTGCCTATGAAGATACATGGTCT 705
Query 417 GCTATTCAGTGGATCTTT-TCTCATT-C--T-GA-----T------GATTGGATTAATGA 460
|||||||| ||||| ||| || |||| | | || | ||||||||||| |
Sbjct 706 GCTATTCAATGGAT-TTTCTCACATTCCTGTGGATCTGGTGAAGAAGATTGGATTAACAA 764
Query 461 ATACGCCGATTTCGACAGAGTTTTTATCGCCGGAGATAGCGCCGGAGCCAATATATCACA 520
|||||| |||||||| ||||||||| ||||||||||||| ||||| | |||||||| ||
Sbjct 765 ATACGCTGATTTCGAAAGAGTTTTTCTCGCCGGAGATAGTGCCGGTGGTAATATATCTCA 824
Query 521 TCACATGGGAATAAGAGCTGGTGAGGAGAAGCTTAAGCCTGGAATCAAAGGGATTGTTAT 580
|||||||| || ||||||||| | ||||||||||||||| |||||||||||| ||| ||
Sbjct 825 TCACATGGCTATGAGAGCTGGTAAAGAGAAGCTTAAGCCTAGAATCAAAGGGACTGTGAT 884
Query 581 GGTGCATCCAG-GTTTTTGGGGGAAAGATCCGATCGACGTA-CACGATGTGCAAGACAGA 638
|||||||||| | ||||||||||||||||| |||| | | |||||||||||||| |||
Sbjct 885 TGTGCATCCAGCG-ATTTGGGGGAAAGATCCGGTCGATG-AGCACGATGTGCAAGATAGA 942
Query 639 GAAATAAGGAGTA--GAATCACACATA-TTTGGGA-AAAGATCGTGAGCCCTAGTAGTGT 694
|| || | ||| | || | || | | ||||||| ||| || ||||| || | ||||||
Sbjct 943 GAGATCA-GAG-ACGGAGTTGCAGA-AGTTTGGGAGAAA-ATTGTGAGTCCGAATAGTGT 998
Query 695 TGATGGGGCGAATGATCCGTGGTTAAATGTGGTTGGATCCGGGTCGGATGTTTCCGAGAT 754
|||||| ||| ||||||||||||| ||||||||||||||||||||| || |||||| |||
Sbjct 999 TGATGGAGCGGATGATCCGTGGTTTAATGTGGTTGGATCCGGGTCGAATTTTTCCGGGAT 1058
Query 755 GGGATGTGAGAAGGTTTTGGTTGCGGTGGCCGGGAAAGATGTGTTTTGGCGGCAAGGATT 814
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1059 GGGATGTGACAAGGTTTTGGTTGAGGTGGCTGGGAAAGATGTGTTTTGGCGGCAAGGATT 1118
Query 815 GGCTTACGCGGCGAAGTTGGAGAAGAGTGAGTGGAAAGGA-ACCGTGGAAGTGGTGGAAG 873
||||||||||||||| | ||||||||| |||||||||| | ||||| ||| | || |
Sbjct 1119 AGCTTACGCGGCGAAGCTAAAGAAGAGTGGGTGGAAAGGAGAG-GTGGAGGTGATTGAGG 1177
Query 874 ACGAAGAGGAAG-GACACTGCTTCCATCTCCATAAC-CCTATTTCTCAAAACGCTTCGAA 931
| ||||| |||| | || |||||||||||| ||| || | |||| |||| ||| | |
Sbjct 1178 AAGAAGATGAAGAG-CATTGCTTCCATCTCT-TAAATCCAAGTTCTGAAAATGCTCCCAG 1235
Query 932 ATTGATGAGGAAATTTGTGGAGTTTATCA 960
|| |||| || |||||||||||||||||
Sbjct 1236 CTTCATGAAGAGATTTGTGGAGTTTATCA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5