BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923386
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49650.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1644 0.0
> AT1G49650.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:18377252-18378634 REVERSE LENGTH=1383
Length=1383
Score = 1644 bits (890), Expect = 0.0
Identities = 1074/1163 (92%), Gaps = 12/1163 (1%)
Strand=Plus/Plus
Query 4 AAAATATTCCGGTAACCATGCTCCGAAGAATCACTTGTTCCTCTTCACTCGCTTCACCCT 63
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 131 AAAATATTCCGGGAACCATGCTCCGAAGAATCACTTGTTCTTCTTCACTTGCTTCACCCT 190
Query 64 CTCTCTTCCTCCGCTTCTTTCGCC-AGTCCCCTCGCTCTTACTCCTCACCGACCACCATC 122
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 191 CTCTCTTCCTCCGCTTCTTTCGCCAACT-CCCTCGCTCTTACTCCTCACCGACCACCATC 249
Query 123 ACCGTCTCGGGCCGCAACATTCGCCGACTACCCACTCCGACCACTCTTCGTTGCATTTGT 182
||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 250 GCCGTCTCAGGCCGCAACATTCGCCGACTATCAACTCCAACCACTCTTCGTTGCATTTGT 309
Query 183 TCACACTCTTCGTCCGAAATCATCTCCGAGCACCCTCCGTTCATCCGGGTTTACAAAGAC 242
||||||||||| || ||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 310 TCACACTCTTCATCTGAAATCATCTCCGAGCATCCTCCGTTCGTCAGGGTTTACAAAGAC 369
Query 243 GGTCGTATCGAACGTCTTTCGGGCACCGAAACCGCCCCGGCATCTCTAAGCCCCCAAAAC 302
|||||||||||||||||||| ||||||||||| | |||||| ||||||| ||| | ||||
Sbjct 370 GGTCGTATCGAACGTCTTTCCGGCACCGAAACAGTCCCGGCTTCTCTAAACCCACGAAAC 429
Query 303 GACGTCGTGTCAAAAGACGTCGTGTACTCACCGGAGCATAACCTCTCCGTTCGTCTCTTT 362
|||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 430 GACGTCGTTTCAAAAGACGTTGTCTACTCACCGGGGCATAACCTCTCCGTTCGTCTCTTT 489
Query 363 CTCCCTCATAAATCCACACAACTCGCCGCCGGTGACAAACTCCCTCTACTTATCTACTTC 422
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 CTCCCTCACAAATCAACACAACTCGCCGCCGGTAACAAACTCCCTCTACTTATCTACTTC 549
Query 423 CACGGCGGAGCTTGGACAATCGAGTCCCCTTTCTCCCCAATCTACCACAATTTCCTCACG 482
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 550 CACGGCGGAGCTTGGATAAACGAATCCCCTTTCTCCCCAATCTACCACAATTTCCTCACG 609
Query 483 GAGGTGGTCAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAATACCGACGTGCGCCGGAA 542
||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 610 GAGGTAGTTAAATCCGCTAACTGCCTCGCCGTCTCGGTTCAATACCGCCGTGCACCGGAA 669
Query 543 GATCCGGTTCCGGCGGCGTATGAAGATACATGGTCCGCGATTCAATGGATTTTCTCACAT 602
|||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||
Sbjct 670 GATCCGGTTCCGGCTGCCTATGAAGATACATGGTCTGCTATTCAATGGATTTTCTCACAT 729
Query 603 TCC-GACGGATCTGGTCCAGAAGATTGGATTAACAAATACGCCGACTTC-AACAGAGTTT 660
||| | ||||||||| |||||||||||||||||||||||| || ||| || |||||||
Sbjct 730 TCCTGT-GGATCTGGTGAAGAAGATTGGATTAACAAATACGCTGATTTCGAA-AGAGTTT 787
Query 661 TTCTCGCCGGAGATAGCGCCGGAGGTAACATATCTCATCACATGGCTATGAGAGCTGGTA 720
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 788 TTCTCGCCGGAGATAGTGCCGGTGGTAATATATCTCATCACATGGCTATGAGAGCTGGTA 847
Query 721 AAGAGAAGCTCAAGCCTAGAATCAAAGGGACAGTGATAGTGCATCCAGCTATTTGGGGAA 780
|||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 848 AAGAGAAGCTTAAGCCTAGAATCAAAGGGACTGTGATTGTGCATCCAGCGATTTGGGGGA 907
Query 781 AAGATCCGGTCGATGAACACGATGTGCAAGACAAAGAGATCAGA-AGCGGAGTTGCACAA 839
|||||||||||||||| |||||||||||||| | |||||||||| | |||||||||| ||
Sbjct 908 AAGATCCGGTCGATGAGCACGATGTGCAAGATAGAGAGATCAGAGA-CGGAGTTGCAGAA 966
Query 840 GTTTGGGAGAAGATTGTGAGTCCGAATAGTGTTGATGGAGCGGATGACCCGTGGTTTAAT 899
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 967 GTTTGGGAGAAAATTGTGAGTCCGAATAGTGTTGATGGAGCGGATGATCCGTGGTTTAAT 1026
Query 900 GTAGTTGGATCCGGGTCGGATTTTTCCGAGATGGGATGTGAGAAGGTTTTGGTTGCGGTG 959
|| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 1027 GTGGTTGGATCCGGGTCGAATTTTTCCGGGATGGGATGTGACAAGGTTTTGGTTGAGGTG 1086
Query 960 GCTGGAAAAGATCTGTTTTGGCGGCAAGGATTAGCTTATGCGGCGAAGCTGAAGAAGAGT 1019
||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1087 GCTGGGAAAGATGTGTTTTGGCGGCAAGGATTAGCTTACGCGGCGAAGCTAAAGAAGAGT 1146
Query 1020 GGGTGGCAAGGA-ACGGTGGAGGTGATGGAGGAAGAAGATGAAGATCATTGCTTCCATCT 1078
|||||| ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1147 GGGTGGAAAGGAGA-GGTGGAGGTGATTGAGGAAGAAGATGAAGAGCATTGCTTCCATCT 1205
Query 1079 CTTGAGCCCTAA-TTCTGAAAATGCTCCCAAATTCATGAAGAGATTTGTGGAGTTTATCA 1137
||| | || || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1206 CTTAAATCC-AAGTTCTGAAAATGCTCCCAGCTTCATGAAGAGATTTGTGGAGTTTATCA 1264
Query 1138 CTGGTCAAAATTGTTCTTTGTGT 1160
||||| || ||||||||||||||
Sbjct 1265 CTGGTTAACATTGTTCTTTGTGT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5