BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923388

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfa...   337    9e-92
  AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycero...   165    4e-40


> AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily 
protein | chr1:24638685-24641494 REVERSE LENGTH=2495
Length=2495

 Score =  337 bits (182),  Expect = 9e-92
 Identities = 255/290 (88%), Gaps = 6/290 (2%)
 Strand=Plus/Plus

Query  283   ACAAGATGTTGTGGGATTGATGATACAGATACTTTGCCTCCACTTTTTGTTTGTTCTAAT  342
             ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  2169  ACACGATGTTGTGGGATTGATGATTCAGATACTTTGCCTCCACTTTTTGTTTGTTCGAAT  2228

Query  343   TGTTGTGAAGAATTTGCAGAGCAACAGAAGAAAGTGTTGCAGCCAAAGTATGAGTTTCCA  402
             || ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  2229  TGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTGCTGCAGCCAAAGTATGAGTTTCCA  2288

Query  403   AGTGCAGAGAATGTGTTTCTGATTGAATCAGGTGATGATTACTTTGGAGGAGATGAGAGA  462
             ||| |||||||||||||| || ||||||| |  ||||||| |||||||| |  | |||||
Sbjct  2289  AGTTCAGAGAATGTGTTTTTGCTTGAATCTGCAGATGATTTCTTTGGAG-A--TCAGAGA  2345

Query  463   TCTCTTGGTATGATTTTTCTTGAAGAAAACTTTCTCTTACAAAACCCCTTTTTGGATCAA  522
             | ||||||||||||||||| ||||||||||| ||| ||  |||  |  ||||||||||||
Sbjct  2346  TGTCTTGGTATGATTTTTCCTGAAGAAAACTATCTTTTGTAAAGTCAGTTTTTGGATCAA  2405

Query  523   ACATTGTGGATAAATCAATTCTTTTGTAAATGAAAC-ATGATTGTATATG  571
             || |||| ||||| ||||||||||||||||  |||| |  ||||||||||
Sbjct  2406  ACTTTGTAGATAA-TCAATTCTTTTGTAAACAAAACCAA-ATTGTATATG  2453


> AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycerol 
synthase 5 | chr3:22406406-22408597 FORWARD LENGTH=1689
Length=1689

 Score =  165 bits (89),  Expect = 4e-40
 Identities = 197/245 (80%), Gaps = 23/245 (9%)
 Strand=Plus/Plus

Query  45   GTATAAGCC-TGTACCCCTCTCATTGAGTTCTCTCTGTACATGTCCTTGCCGTTCCACT-  102
            ||||||||| | |||| || |||||||| |||||||||||||| |||||||||||| || 
Sbjct  158  GTATAAGCCAT-TACCGCTTTCATTGAGCTCTCTCTGTACATGCCCTTGCCGTTCCTCTC  216

Query  103  CAGAGAAAATCTCTTCTTCTTCCCCATTTCTCTGAAAAGTATTTGAATTTGCGTCTCGTC  162
            || || |||| |||  ||||||| || ||||||||||||    |  |       | |  |
Sbjct  217  CA-AGGAAATATCTAATTCTTCCTCAATTCTCTGAAAAG----T--A-------C-C--C  259

Query  163  GATCCCAAACCATTGTCTCATTCTCGATGTAATTGGATTTCTGTTAACCGGAGAGTTATC  222
            ||  ||  |   |||||||||||||| | || |  |||||||||||||||||||||||||
Sbjct  260  GAAACC--ATTGTTGTCTCATTCTCGCTTTACTCCGATTTCTGTTAACCGGAGAGTTATC  317

Query  223  ACGGCCGTTGCACGAGCTGAATCAAATCAAATTGGTGATGATGGCAACTCAAAGGAGCA-  281
            ||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| | 
Sbjct  318  ACGGCCGTTGCTCGAGCTGAATCAAATCAAATTGGTGACGATGCCAACTCAAAGGAGGAA  377

Query  282  CACAA  286
            |||||
Sbjct  378  CACAA  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5