BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923394
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltr... 433 2e-120
AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltr... 241 1e-62
> AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase
12 | chr1:18391338-18393947 REVERSE LENGTH=2004
Length=2004
Score = 433 bits (234), Expect = 2e-120
Identities = 271/288 (94%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 372 GATCGGATTGTTTACTGAT---AGCTGCAAGGAGTGGTTGATGAGAGAAGATTCAGTTAC 428
||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 457 GATCGGATTATTTACTGATAGGAGCTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTAC 516
Query 429 TTATTCTAGAGATTTCACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCA 488
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TTACTCTAGAGATTTTACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCA 576
Query 489 ATGGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAAAACCAGATGCTGCGTT 548
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 577 ATGGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAACACCAGATGCTGCGTT 636
Query 549 TGGATTAGGTCATCAACCTGGAACTCTTAGTATAATTCGTTCCATGGAATCAGCACAGTA 608
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 637 TGGATTAGGTCAGAAACCTGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTA 696
Query 609 CTATCCAGAAAATGATATTGCACAGGCACGACGGTG-G-T-ATGATAT 653
||||||||||||||| ||||||||||||||||| | | | |||||||
Sbjct 697 TTATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATAT 744
Score = 261 bits (141), Expect = 1e-68
Identities = 151/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 909 AGTTGACAAGGTTGAAGCTCTTAAGCGATACAAATTCAGTTTGGCTTTTGAGAACACTAA 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 970 AGTTGACAAGGTTGAAGCTCTTAAGCGATACAAATTCAGTTTGGCTTTTGAGAATACTAA 1029
Query 969 CGAGGAGGATTATGTCACCGAGAAATTCTTTCAATCCTTAGTTGCTGAATCCGTCCCCGT 1028
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1030 CGAGGAAGATTATGTCACCGAGAAGTTCTTTCAATCCTTAGTTGCTGGGTCCGTCCCCGT 1089
Query 1029 GGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCC 1064
||||||||||||||||||||||||||||||||||||
Sbjct 1090 GGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCC 1125
Score = 215 bits (116), Expect = 8e-55
Identities = 152/170 (89%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 645 GTATGATATTATGGCTCCGGTACAGGCTAAGACCGAGAAAGCTATCGCAGCTGCTTTTAT 704
||||||||||||| ||||||||||| | || || |||| |||||| ||||||||||||||
Sbjct 802 GTATGATATTATGTCTCCGGTACAGCCAAAAACTGAGAGAGCTATTGCAGCTGCTTTTAT 861
Query 705 TTCCAATTGTGGTGCTCGGAATTTTCGCCTACAAGCACTTGAAGCCCTGATGAAGACTAA 764
||| ||||||||||||||||||||||| |||||||||||||| || ||||||| |||||
Sbjct 862 TTCTAATTGTGGTGCTCGGAATTTTCGTCTACAAGCACTTGAGGCATTGATGAAAACTAA 921
Query 765 CATCAAGATTGATTCTTATGGTGGTTGTCATCGGAACCGGCATAGAAAAG 814
||| ||||||||||||||||||||||||||||| |||||| || | ||||
Sbjct 922 CATTAAGATTGATTCTTATGGTGGTTGTCATCGAAACCGGGATGGGAAAG 971
> AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltransferase
11 | chr3:6681196-6683892 REVERSE LENGTH=1810
Length=1810
Score = 241 bits (130), Expect = 1e-62
Identities = 226/270 (84%), Gaps = 15/270 (6%)
Strand=Plus/Plus
Query 394 TGCAAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTATTCTAGAGATTTCACTAAAGA 452
||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TGCCAGGAGTGGTTAGA-GAGAGTGGATTCAGTTACTTATTCTAGAGATTTCACTAAAGA 420
Query 453 TCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTCAA-TGGTGTTCTGTGGATTGTACA 510
||| ||||||||||||||| || || |||||||| ||| | ||| ||||| |||||| |
Sbjct 421 TCCGATTTTTATCTCTGGTAGT-AACAAGGACTT-CAAATCGTGCTCTGTTGATTGTGTA 478
Query 511 TTTGGAGAT--AGTTCAGGGAAAAAACCAGATGCTGCGTTTGGATTAGGTCATCAACCTG 568
| || ||| | ||||| || ||||| ||||| || ||||||||| ||||||||||||
Sbjct 479 AT-GG-GATTCACTTCAGATAAGAAACCTGATGCGGCTTTTGGATTAAGTCATCAACCTG 536
Query 569 GAACTCTTAGTATAATTCGTTCCATGGAATCAGCACAGTACTATCCA-GAAAATGATATT 627
|||| || |||||||| ||||||||||||||||||||||| || ||| || ||| || ||
Sbjct 537 GAACACTCAGTATAATCCGTTCCATGGAATCAGCACAGTATTA-CCAAGAGAATAATCTT 595
Query 628 GCACAGGCACGACGGT--GGT-ATGATATT 654
|| || ||||||||| ||| ||||||||
Sbjct 596 GCTCAAGCACGACGGAAAGGTTATGATATT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5