BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923395
Length=452
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07675.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 217 9e-56
> AT4G07675.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Plant protein 1589 of unknown function
(TAIR:AT1G49700.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:4466013-4467147 REVERSE
LENGTH=504
Length=504
Score = 217 bits (117), Expect = 9e-56
Identities = 312/399 (78%), Gaps = 42/399 (11%)
Strand=Plus/Plus
Query 33 AGTAACAAAGTTGCAAAAACCTAATGATCATCATGATGATCAAGATC-AAGTTCATGATC 91
|||||||||||||||| ||||||||||||||||| ||||| |||| | || || |||||
Sbjct 90 AGTAACAAAGTTGCAAGAACCTAATGATCATCATCATGATGAAGACCAAACTT-TTGATC 148
Query 92 ATTGGTTTGAGTA-TGATGATTTTGCTGATATTGA-AGATGCATTCCCTTCTTTAATCGA 149
| ||||| ||| | ||||||||||||| ||| | | |||| |||||| || ||||| |||
Sbjct 149 AGTGGTTCGAG-ACTGATGATTTTGCTAATA-TAAGAGATTCATTCCTTTGTTTAAGCGA 206
Query 150 TCCGGTTGCTGCACCGGTAACAAACTTGCTGAAACCTAATGATCAAGATCAAATTTATGA 209
|| ||||| |||| | || | ||| ||||||||||||| ||||||||| || |||
Sbjct 207 TCTGGTTGATGCA-C-----CAGAGGTGCAGAAACCTAATGATGAAGATCAAAGTTGTGA 260
Query 210 TCAGTGGATTAATGGATCTAATG----A---T-T-T-G--G---C---TTC-TC--TCAT 248
||||||||||||||| ||||||| | | | | | | | ||| || | ||
Sbjct 261 TCAGTGGATTAATGGGTCTAATGATTTAGCTTCTATAGAAGAAACAGTTTCTTCTTTGAT 320
Query 249 CGATCCATCACTGTTTGCTGAAACACTACAATCAGATCCTCCTACAACTGGTCTACGATA 308
| ||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct 321 CAATCCATCACCGTTTGCTGAAACACCACAATCAGA---ACCT-C--CTGGTCTACGATA 374
Query 309 CGATATTGATTCTTATGATTCGATTTTTGAACAATGGGCTAGAGATTTAGAAGATCAACA 368
||||| | || | ||| |||| | ||||||||| |||||||||||||||||||||||
Sbjct 375 CGATACCGGTTGTGCTGACTCGAATCTTGAACAATTCGCTAGAGATTTAGAAGATCAACA 434
Query 369 ACAGAGAATGAAAAAGAAAAT-CCAGAGATCACCAACAA 406
|||||| ||| || | ||||| ||||||| || |||||
Sbjct 435 ACAGAGGATGCAACA-AAAATTCCAGAGAGGAC-AACAA 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21514596572
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5