BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923398
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltr... 2409 0.0
AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltr... 1171 0.0
> AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase
12 | chr1:18391338-18393947 REVERSE LENGTH=2004
Length=2004
Score = 2409 bits (1304), Expect = 0.0
Identities = 1492/1584 (94%), Gaps = 7/1584 (0%)
Strand=Plus/Plus
Query 1 TTGATTCCTCCTCTAGTTTAATGGGTGTTTTCTCAAATCTTCGAGGACCCAGAATCGGAG 60
||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 159 TTGATTCATCCTCTAGGTTAATGGGTGTTTTCTCGAATCTTCGAGGACCCAGAGCCGGAG 218
Query 61 CTACCCACGATGAATTACCGGCGGCAAATGGCTCTCCTTCTTCTTCTTCGTCTCCCTCTA 120
|||||||||||||||| |||||| | |||||||||||||| |||||||| ||||| |||
Sbjct 219 CTACCCACGATGAATTTCCGGCGACCAATGGCTCTCCTTCGTCTTCTTCTTCTCCATCTT 278
Query 121 CATCAATCAAGCGAAAGTTGTCGAATTTGTTACCACTCTGCGTTGCTCTTGTAGTTATCG 180
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 279 CATCAATCAAGCGAAAATTATCGAATTTGTTACCACTCTGCGTTGCTCTGGTAGTTATCG 338
Query 181 CTGAGATCGGGTTTCTGGGTCGGCTCGATAAAGTCGCTTTAGTCGATACGTTGACCGATT 240
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 339 CTGAGATCGGGTTTCTGGGTCGGCTCGATAAAGTCGCTTTGGTTGATACGTTGACTGATT 398
Query 241 TCTTCACCCAGTCTCCGTCACTCTCGCAGTCTCCACCGGCGAGATCCGATCGGAAAAAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 399 TCTTCACCCAGTCTCCGTCACTCTCGCAGTCTCCACCGGCGAGATCCGATCGGAAGAAGA 458
Query 301 TCGGATTGTTTACAGATA--A-CTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTACTT 357
||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 459 TCGGATTATTTACTGATAGGAGCTGCGAGGAGTGGTTGATGAGAGAAGATTCAGTTACTT 518
Query 358 ATTCTAGAGATTTCACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTAAAT 417
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 519 ACTCTAGAGATTTTACTAAAGATCCAATTTTTATCTCTGGTGGTGAAAAGGACTTTCAAT 578
Query 418 GGTGTCCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAAAACCAGATGCTGCGTTTG 477
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 579 GGTGTTCTGTGGATTGTACATTTGGAGATAGTTCAGGGAAAACACCAGATGCTGCGTTTG 638
Query 478 GATTAGGTCATCAACCTGGAACTCTTAGTATAATCCGCTCCATGGAATCAGCACAGTACT 537
|||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 639 GATTAGGTCAGAAACCTGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTATT 698
Query 538 ATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 ATCCAGAAAATGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTA 758
Query 598 GTCTATCATCAGATGTTCCTGTTGGGTATTTTTCGTGGGCGGAGTATGATATTATGGCTC 657
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 759 GTCTATCATCAGATGTTCCTGTTGGATATTTTTCGTGGGCGGAGTATGATATTATGTCTC 818
Query 658 CGGTACAGGCTAAGACCGAAAAAGCTATCGCAGCTGCTTTTATTTCTAATTGTGGTGCTC 717
|||||||| | || || || | |||||| |||||||||||||||||||||||||||||||
Sbjct 819 CGGTACAGCCAAAAACTGAGAGAGCTATTGCAGCTGCTTTTATTTCTAATTGTGGTGCTC 878
Query 718 GGAATTTTCGTTTACAAGCACTTGAAGCCCTGATGAAAACTAACGTTAAGATTGATTCTT 777
||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 879 GGAATTTTCGTCTACAAGCACTTGAGGCATTGATGAAAACTAACATTAAGATTGATTCTT 938
Query 778 ATGGTGGTTGTCATCGAAACCGGGATGGAAAAGTTGACAAGGTTGAAGCTCTTAAGCGAT 837
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 939 ATGGTGGTTGTCATCGAAACCGGGATGGGAAAGTTGACAAGGTTGAAGCTCTTAAGCGAT 998
Query 838 ACAAATTCAGTTTGGCTTTTGAGAATACTAACGAGGAGGATTATGTCACCGAGAAATTCT 897
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 999 ACAAATTCAGTTTGGCTTTTGAGAATACTAACGAGGAAGATTATGTCACCGAGAAGTTCT 1058
Query 898 TCCAATCCCTAGTTGCTGGATCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAAT 957
| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TTCAATCCTTAGTTGCTGGGTCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAAT 1118
Query 958 TTGCGCCTGCTTCAGACTCATTCCTTCACATTAAGAGTATGGAAGATGTAGAGCCAGTTG 1017
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1119 TTGCGCCTGCTTCGGACTCATTCCTTCACATTAAGACTATGGAAGATGTAGAGCCAGTTG 1178
Query 1018 CAAAGAGAATGAAGTATCTTGCAGCTAACCCTACTGCTTATAATCAGACACTAAGATGGA 1077
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1179 CAAAGAGAATGAAGTATCTCGCAGCTAACCCTGCTGCTTATAATCAGACACTAAGATGGA 1238
Query 1078 AATATGAGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTT 1137
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AATACGAGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTT 1298
Query 1138 CTTGCCGTCTCTGCATTTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGAAAAGCCCGA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1299 CTTGCCGTCTCTGCATTTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGGAAAGCCCTA 1358
Query 1198 ATTTCAAGAAACGACCTTGCAAATGCAGTAGGGGAGGATCAGACACACTTTATCATGTTT 1257
|||||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||
Sbjct 1359 ATTTCAAGAAACGACCGTGCAAATGTAGCAGGGGAGGATCAGACACAGTTTATCATGTTT 1418
Query 1258 TTGTTAGAGAAAGAGGCCGGTTTGAAATGGAATCCA-TCTTTCTAAGGGGTAAAAATCTG 1316
|||||||||||||||||||||||||||||||||| | ||||| | |||||||||| | ||
Sbjct 1419 TTGTTAGAGAAAGAGGCCGGTTTGAAATGGAATC-AGTCTTTTTGAGGGGTAAAAGTGTG 1477
Query 1317 ACTCAGGAAGCTCTAGAATCTGCGGTTCTCACCAAATTCAAGTCTCTTAAA-CGTGAGCC 1375
||||||||||||||||||||||| |||||| |||| ||||||||| ||||| | |||| |
Sbjct 1478 ACTCAGGAAGCTCTAGAATCTGCAGTTCTCGCCAAGTTCAAGTCT-TTAAAACATGAGGC 1536
Query 1376 GGTTTGGAAGAAGGAAAGGCCTGGAAGCTTAAAAGGAGACAATGAGCTTAGAGTACACCG 1435
|| |||||||||||||||||||||| ||||||||||||||| ||||||| | |||| ||
Sbjct 1537 AGTGTGGAAGAAGGAAAGGCCTGGAAACTTAAAAGGAGACAAAGAGCTTAAAATACATCG 1596
Query 1436 GATATATCCGCTTGGCCTAACGCAACGACAGGCTTTGTACAAGTTCAAATTCGAGGGAAA 1495
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1597 GATTTACCCGCTTGGCCTAACGCAACGACAGGCTTTGTACAACTTCAAATTCGAGGGAAA 1656
Query 1496 CTCGAGTTTAAGTAGTCACATTCAAGACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1555
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCGAGTCTAAGTAGTCACATTCAAAACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1716
Query 1556 CTAGTTTCATTCCTCTGAATCTGT 1579
||||||||||||||||| ||||||
Sbjct 1717 CTAGTTTCATTCCTCTGGATCTGT 1740
> AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltransferase
11 | chr3:6681196-6683892 REVERSE LENGTH=1810
Length=1810
Score = 1171 bits (634), Expect = 0.0
Identities = 1060/1263 (84%), Gaps = 39/1263 (3%)
Strand=Plus/Plus
Query 314 AGATAACTGCGAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTATTCTAGAGATTTCA 372
||| || ||| |||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 355 AGAGAAATGCCAGGAGTGGTTAGA-GAGAGTGGATTCAGTTACTTATTCTAGAGATTTCA 413
Query 373 CTAAAGATCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTAAATGGTG-TCCTGTGGA 430
|||||||||| ||||||||||||||| || || |||||||| |||| ||| || ||| ||
Sbjct 414 CTAAAGATCCGATTTTTATCTCTGGTAGT-AACAAGGACTTCAAATCGTGCTC-TGTTGA 471
Query 431 TTGTACATTTGGAGAT--AGTTCAGGGAAAAAACCAGATGCTGCGTTTGGATTAGGTCAT 488
|||| | | || ||| | ||||| || ||||| ||||| || ||||||||| |||||
Sbjct 472 TTGTGTAAT-GG-GATTCACTTCAGATAAGAAACCTGATGCGGCTTTTGGATTAAGTCAT 529
Query 489 CAACCTGGAACTCTTAGTATAATCCGCTCCATGGAATCAGCACAGTACTATCCA-GAAAA 547
||||||||||| || ||||||||||| |||||||||||||||||||| || ||| || ||
Sbjct 530 CAACCTGGAACACTCAGTATAATCCGTTCCATGGAATCAGCACAGTATTA-CCAAGAGAA 588
Query 548 TGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTAGTCTATCATC 607
| ||||||| || |||||||||| |||||||||||| |||||||| |||||||| |||||
Sbjct 589 TAATCTTGCTCAAGCACGACGGAAAGGTTATGATATTGTGATGACAACTAGTCTGTCATC 648
Query 608 AGATGTTCCTGTTGGGTATTTTTCGTGGGCGGAGTATGATATTATGGCTCCGGTACAGGC 667
|||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |
Sbjct 649 AGATGTTCCTGTTGGGTATTTTTCATGGGCGGAATATGATATTATGGCTCCAGTGCAACC 708
Query 668 TAAGACCGAAAAAGCTATCGCAGCTGCTTTTATTTCTAATTGTGGTGCTCGGAATTTTCG 727
|| || || |||||| | || |||||||||||||| ||||| | ||||||||||| ||
Sbjct 709 AAAAACAGAGAAAGCTCTTGCTGCTGCTTTTATTTCCAATTGCGCCGCTCGGAATTTCCG 768
Query 728 TTTACAAGCACTTGAAGCCCTGATGAAAACTAACGTTAAGATTGATTCTTATGGTGGTTG 787
| ||||| ||||||||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 769 CCTGCAAGCTCTTGAAGCCTTAATGAAGACGAATGTTAAGATTGATTCTTATGGTGGTTG 828
Query 788 TCATCGAAACCGGGATGGAAAAGTTGACAAGGTTGAAGCTCTTAAGCGA-TACAAATTCA 846
||| || || |||||||| | || || ||||||||||||||||||| | ||||||||||
Sbjct 829 TCACCGGAATCGGGATGGGAGTGTGGAGAAGGTTGAAGCTCTTAAGC-ACTACAAATTCA 887
Query 847 GTTTGGCTTTTGAGAATACTAACGAGGAGGATTATGTCACCGAGAAATTCTTCCAATCCC 906
|| | ||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 888 GTCTAGCTTTTGAGAACACCAACGAGGAGGATTATGTCACAGAGAAGTTCTTCCAATCTC 947
Query 907 TAGTTGCTGGATCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCCTG 966
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||| |||
Sbjct 948 TAGTCGCTGGATCTGTCCCTGTGGTTGTTGGAGCTCCAAATATAGAAGAATTTGCACCTT 1007
Query 967 CTTCAGACTCATTCCTTCACATTAAG-AGTATGGAAGATGT-AGAGCCAGTTGCAAAGAG 1024
|| | ||||||||||||||||||||| || ||||| ||||| | || ||||||||||||
Sbjct 1008 CTCCTGACTCATTCCTTCACATTAAGCAG-ATGGATGATGTCA-AGGCAGTTGCAAAGAA 1065
Query 1025 AATGAAGTATCTTGCAGCTAACCCT-ACTGCTTATAATCAGACACTAAGATGGAAATATG 1083
||||||||||||||| | ||||||| || || ||||||||||| |||||||||||| |||
Sbjct 1066 AATGAAGTATCTTGCGGATAACCCTGAC-GCCTATAATCAGACGCTAAGATGGAAACATG 1124
Query 1084 AGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTTCTTGCC 1143
| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 1125 AAGGCCCTTCAGATTCTTTTAAGGCACTTATTGATATGGCTGCTGTACACTCTTCTTGTC 1184
Query 1144 GTCTCTGCAT-TTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGAAAAGCCC-GAATTT 1201
|||||||||| ||| |||| || ||| | || || ||||||||||| ||||| || |||
Sbjct 1185 GTCTCTGCATCTTTG-TGGCTACAAGGATTCGTGAGCAAGAAGAGAAGAGCCCTGAGTTT 1243
Query 1202 CAAGAAACGACCTTGCAAATGCAGTAGGGGAGGATCAGACACACTTTATCATGTTTT-TG 1260
|||| |||||| |||||||||| || ||| ||||| ||| |||||||| || | ||
Sbjct 1244 -AAGAGACGACCCTGCAAATGCACCAG---AGGCTCAGAGACAGTTTATCAT-TTGTATG 1298
Query 1261 TTAGAGAAAGAGGCCGGTTTGAAATGGAATCCATCTTTCT--AAGGGGTAAAAATCTGAC 1318
||||||||||||| |||||||| |||||||||||||| || |||| | |||||||||
Sbjct 1299 TTAGAGAAAGAGGACGGTTTGACATGGAATCCATCTT-CTTGAAGGA-TGGAAATCTGAC 1356
Query 1319 TCAGGAAGCTCTAGAATCTGCGGTTCTCACCAAATTCAAGTCTCTTAAACGTGAGCCGGT 1378
|| ||||||||| |||||||||||||| | || |||| |||||| | | ||| || |
Sbjct 1357 TCTGGAAGCTCTGGAATCTGCGGTTCTTGCGAAGTTCATGTCTCTGAGATATGAACCAAT 1416
Query 1379 TTGGAAGAAGGAAAGGCCTG-GAAGCTTAAAAGGAGACAATGAGCTTAGAGTACACCGGA 1437
|||||||||||||| || | || |||||| ||||||| ||||||||||||| |||
Sbjct 1417 ATGGAAGAAGGAAAGACCCGCGA-GCTTAAGAGGAGACGGCAAGCTTAGAGTACATGGGA 1475
Query 1438 TATATCCGCTTGGCCTAACGCAACGACAGGCT-TTGTACAAGTTCAAATTCGAGGGAAAC 1496
||||||| |||| || || ||| |||| ||| || ||||| ||||||||||| |||||
Sbjct 1476 TATATCCTATTGGTCTGACTCAAAGACAAGCTCTT-TACAACTTCAAATTCGAAGGAAAT 1534
Query 1497 TCGAGTTTAAGTAGTCACATTCA-AGACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1555
|| ||| | |||| |||||| || ||| ||||||||| | ||||| || |||||||| ||
Sbjct 1535 TCAAGTCTCAGTACTCACATACAGAGA-AACCCTTGTCCCAAATTCGAAGTTGTCTTTGT 1593
Query 1556 CTA 1558
|||
Sbjct 1594 CTA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5