BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923418
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49840.1 | Symbols: | Protein of unknown function (DUF620) ... 2351 0.0
AT3G19540.1 | Symbols: | Protein of unknown function (DUF620) ... 977 0.0
> AT1G49840.1 | Symbols: | Protein of unknown function (DUF620)
| chr1:18452070-18454358 FORWARD LENGTH=1859
Length=1859
Score = 2351 bits (1273), Expect = 0.0
Identities = 1450/1535 (94%), Gaps = 13/1535 (1%)
Strand=Plus/Plus
Query 1 GTTTCATTTTTAAGAGTCC-T---TAATGGAGAAGAAACAAGGGTTTTTCTCATCACTCA 56
||| ||||||||||||||| | |||||| ||||||||||| ||||||||||||||||
Sbjct 148 GTTACATTTTTAAGAGTCCATAAAAAATGGAAAAGAAACAAGGTTTTTTCTCATCACTCA 207
Query 57 GAGACGAAGTCGTAAGAGGCTTCTCTCCTTCTCGTTCACGACCACGTTCTCGTTCCGCGA 116
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 208 GAGACGAAGTCGTAAGAGGCTTATCTCCTTCTCGTTCAAGACCACGTTCTCGTTCCGCAA 267
Query 117 GCCCATCTCGTTCAACAAACCCACACATGAAAGCTCTTCTCTGGGGGAGAAAGAAACTAA 176
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 268 GCCCGTCTCGTTCAACAACCCCACACATGAAAGCTCTTCTCTGGGGAAGAAAGAAACTAA 327
Query 177 TCGCAAGCTCCGGCTGCAGCGGCGGCggaggagtaagcggaggaggaggaggaggaTT-T 235
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||| || |
Sbjct 328 TCGCAAGCTCCGGCTGCAGCGGCGGCGGAGGAGTAATCGGAGGAGAAAGAGGAGG-TTAT 386
Query 236 TACTTGCCGCAACCAGAGCCGTTGATTGGGAGATCCAGTAGTTTAAGACCAGTAATGGAA 295
|||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 387 TACTTGTCGCAACCTGAGCCGTTTATTGGAAGATCCAGTAGTTTAAGACCAGTAATGGAA 446
Query 296 GGTCCTGATCCAGACAACGGTGAAATTTCTGGAGGGGATTCGAAACGACTCGGGTCGGGT 355
|||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 447 GGTCCTGATCCAGATAACGGTGAAGTCTCTGGAGTGGATTCGAAACGACTCGGGTCGGGT 506
Query 356 TTAAGTCATTGGGTCAAAGGTCAGTGGTCACGTGCTCCGTCCGTGACTTC-A--ACGCCG 412
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 507 TTAAGTCATTGGGTCAAAGGTCAGTGGTCACGTGCTCCGTCCGTGACTTCAACTACGCCG 566
Query 413 GTTTATCGGAGGTCTGATTTGCGGCTTCTTCTCGGCGTTATGGGAGCTCCTCTCGCTCCC 472
| |||||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 567 GCTTATCGGAAGTCTGATTTGAGACTTCTTCTCGGTGTTATGGGAGCTCCTCTCGCTCCC 626
Query 473 ATTAACGTCTCTTCCTCCAATCATCTTCTTCATCTCACCATCAGAGACTCTCCCATTGAA 532
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 627 ATTAACGTCTCTTCCTCCAGTCATCTTCTTCATCTCACCATCAGAGACTCTCCCACTGAA 686
Query 533 ACAACATCTGCACAATACATTTTGCAACAGTACACGGCAGCTTGTGGTGGCCACAAGTTA 592
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 687 ACATCATCTGCACAGTACATTTTGCAACAGTACACGGCGGCTTGTGGTGGCCACAAGTTA 746
Query 593 CAAAACACCATTAAGAACGCTTATGCTATGGGTAAGCTCAAGATGATAACTTCAGAGCTT 652
|| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 747 CATAACGCCATTAAGAACGCTTATGCTATGGGTAAGTTAAAGATGATAACTTCAGAGCTT 806
Query 653 GAAACTCCCACAGGCACTGTTAGAAACCGAAACTCTGCAAAGTCGGAAACTGGTGGGTTT 712
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 807 GAAACTCCTACAGGAACTGTTAGAAACCGAAACTCTACAAAGTCGGAAACTGGTGGGTTT 866
Query 713 GTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCTCTGTTGGTGGTAGTAAA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCTCTGTTGGTGGTAGTAAA 926
Query 773 GTTCGTGCTGGCTGCAATGGCAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCTCAC 832
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 927 GTTCGTGCTGGCTGTAATGGGAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCTCAC 986
Query 833 ACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGACCCGAGAACT 892
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 987 ACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGATCCGAGAACT 1046
Query 893 ACTGCCACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAAGAT 952
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ACTGCTACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAAGAT 1106
Query 953 TGTTTCATTCTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGACCA 1012
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TGTTTCATTTTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGACCA 1166
Query 1013 GCGGAGATCGTAAGACATATCCTTTTTGGTTACTTCAGCCAAAGAACAGGACTTTTAGCT 1072
|| ||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1167 GCAGAGATTGTAAGACACATCCTTTTCGGTTACTTCAGCCAAAGAACAGGACTTCTAGCT 1226
Query 1073 CAAATCGAGGATTCGCAGTTGACCCGTATCCAATCAAACGATGGTGATGCTGTTTATTGG 1132
||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 1227 CAAATTGAGGATTCGCAGTTGACTCGAATCCAATCTAACGATGGTGATGCTGTTTACTGG 1286
Query 1133 GAGACCACGATCAATTCGTCTCTAGACGATTACAAACCAG-TCGAAGGGATCATGATTGC 1191
||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||
Sbjct 1287 GAGACCACGATCAATTCGTCTCTAGACGACTACAAAC-AGGTGGAAGGGATCATGATTGC 1345
Query 1192 TCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTCGCAATGAGCCACAC 1251
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1346 TCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTTGCTATGAGCCACAC 1405
Query 1252 TAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTTGCTTTCGATGTTCCTGGTCT 1311
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1406 TAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTCGCTTTCAATGTTCCTGGTCT 1465
Query 1312 GTCTCTAGATTGCTTTATTCCACCCGCTGATCTTAGGTCTAGTTCGTTAACTGAAGCCTC 1371
|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1466 GTCTCTAGATTGCTTTATCCCACCCGCTGATCTTCGGTCTGGTTCGTTAACTGAAGCCTG 1525
Query 1372 CGAGTACTCGGGTCACGAGGAGAAAGGGAAGAGTTCGA-TCGCATTAGCTGCAACAACAG 1430
||||||||||||||| ||||||||||||||||| || | | || || ||| |||||||||
Sbjct 1526 CGAGTACTCGGGTCAAGAGGAGAAAGGGAAGAGCTC-ACTAGCGTTGGCTTCAACAACAG 1584
Query 1431 CTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTTGACAATGATCCGGTTTGGC 1490
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1585 CTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTCGACAATGATCCTGTTTGGC 1644
Query 1491 ATATTGATGTCTGAGTTTGGTAGGGAAGATGCAAT 1525
|||||||||||||||| ||||||||||||||||||
Sbjct 1645 ATATTGATGTCTGAGTATGGTAGGGAAGATGCAAT 1679
> AT3G19540.1 | Symbols: | Protein of unknown function (DUF620)
| chr3:6780619-6783166 FORWARD LENGTH=2134
Length=2134
Score = 977 bits (529), Expect = 0.0
Identities = 1044/1288 (81%), Gaps = 53/1288 (4%)
Strand=Plus/Plus
Query 243 CGCAACCAGAGCCGTTGATTGGGAGATCCAGTAGTTTAAGACCAGTAATGGAAGGTCCTG 302
|||||||||||| ||| |||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 337 CGCAACCAGAGCAGTTAATTGGGAGATCCGGAAGTTTGAGACCTGTAATGGAAGGTCCTG 396
Query 303 ATCCAGA-CAACGG-TGA--A-AT--TTCTGGAGGGGATTCGAAACGACTCGGGTCGGGT 355
||||||| || || || | | | | ||| || || ||||||||||||||||||
Sbjct 397 ATCCAGATGAA-GGAGGAGGAGGTGGTAATATAGGAGAATCTAAACGACTCGGGTCGGGT 455
Query 356 TTAAGTCATTGGGTCAAAGGTCAG-TGGTCACGTGCTCCGTCCG-TGACTTCAACGCCGG 413
||| |||| ||||| ||||| ||| | ||| ||||||||||| | || || | ||| |||
Sbjct 456 TTAGGTCACTGGGTTAAAGGGCAGCT-GTCTCGTGCTCCGTCTGTTG-CTGCGACGGCGG 513
Query 414 TTTATCGGAGGTCTGATTTGCGGCTTCTTCTCGGCGTTATGGGAGCTCCTCTCGCTCCCA 473
||||||||| |||| || | |||||||| || || |||||||||||||| ||||| |
Sbjct 514 CTTATCGGAGAAATGATCTGAGACTTCTTCTTGGTGTAATGGGAGCTCCTCTTGCTCCTA 573
Query 474 TTAACGTCTCTTCCTCCAATCATCTT-CTTCATCTCACCATCAGAGACTCTCCCATTGAA 532
|| | ||||||||||| ||| | || | |||||| | |||| | || |||| || |||
Sbjct 574 TTCATGTCTCTTCCTCTGATCCT-TTGCCTCATCTTAGTATCAAAAACACTCCAATCGAA 632
Query 533 ACAACATCTGCACAATACATT-TTGCAACAGTACACGGCAGCTTGTGGTGGCCACAAGTT 591
||| ||||||| || || ||| || ||||||||||| ||||||| |||||| || ||| |
Sbjct 633 ACATCATCTGCTCAGTATATTCTT-CAACAGTACACTGCAGCTTCTGGTGGTCAGAAGCT 691
Query 592 ACAAAACACCATTAAGAACGCTTATGCTATGGGTAAGCTCAAGATGATAACTTCAGAGCT 651
||||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 692 ACAAAACTCCATTAAAAACGCTTATGCGATGGGGAAGCTCAAGATGATTACTTCAGAGCT 751
Query 652 TGAAACTCCCACAGGCACTGTTAGAAACCGAAACTC-TGCAAAGTCGGAAACTGGTGGGT 710
||||||| | ||| | || ||||| || |||||| | | | ||| | || ||||| || |
Sbjct 752 TGAAACTGCTACAAGAACCGTTAGGAATCGAAACCCAT-CTAAGGCTGAGACTGGAGGTT 810
Query 711 TTGTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCT-CTGTTGGTGGTAGT 769
||||||| |||||||||||||| || |||||||| |||||||| | ||||||| ||||||
Sbjct 811 TTGTTCTTTGGCAGATGAATCCAGACATGTGGTATGTTGAGCT-TGCTGTTGGGGGTAGT 869
Query 770 AAAGTTCGTGCTGGCTGCAATGGCAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCT 829
|| ||||||||||||||||||||||||||||| ||| |||| ||||||||||| || |||
Sbjct 870 AAGGTTCGTGCTGGCTGCAATGGCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCT 929
Query 830 CACACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGACCCGAGA 889
|| |||||||||||||| ||||| ||||| || |||| |||||||||||| || ||||||
Sbjct 930 CATACTGCTAAAGGACCTGTCAGACCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGA 989
Query 890 ACTACTGCCACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAA 949
|| ||||| | |||||||| ||| |||| ||| | ||||||| ||||||||||||||||
Sbjct 990 ACAACTGCTGCAATGTTTGCGGAAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAA 1049
Query 950 GATTGTTTCATTCTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGA 1009
||||| |||||| ||||| |||| ||||| |||||||| |||| |||||||| ||||||
Sbjct 1050 GATTGCTTCATTTTGAAGTTATGCACTGACCCTGAAACACTAAAAGCGAGGAGCGAAGGA 1109
Query 1010 CCAGCGGAGATCGTAAGACATATCCTTTTTGGTTACTTCAGCCA-AAGAACAGGACTTTT 1068
|| || |||||| | || ||| |||| ||||| |||||||| || || |||||| || ||
Sbjct 1110 CCGGCTGAGATCATTAGGCATGTCCTCTTTGGCTACTTCAGTCAGAA-AACAGGGCTCTT 1168
Query 1069 AGCTCAAATCGAGGATTCGCAGTTGACCCGTATCCAATCAAACGATGGTGATG-CTGTTT 1127
| ||| || |||||||| || |||||||| || ||||| |||| ||| || | ||||||
Sbjct 1169 GGTTCACATTGAGGATTCACATTTGACCCGGATTCAATCTAACGGTGGAGA-GACTGTTT 1227
Query 1128 AT-TGGGAGACCACGAT-CAATTCGTCTCTAGACGATTACAAACCAG-TCGAAGGGATCA 1184
| ||||||||||| || ||| ||||| |||||||||||| | || ||||||| ||||
Sbjct 1228 -TCTGGGAGACCAC-ATACAACTCGTCCCTAGACGATTACCGTC-AGGTCGAAGGAATCA 1284
Query 1185 TGATTGCTCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTCGCAATGA 1244
||||||||||||| |||| || ||||| || || ||||||||||||||||| || | ||
Sbjct 1285 TGATTGCTCACTCGGGACATTCAGTTGTGACACTATTCAGATTTGGGGAAGTGGCGACGA 1344
Query 1245 GCCACACTAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTTGC-TTTCGATGTT 1303
|||| || |||||||||||||| ||||| ||||| ||||| |||||||| ||| | |||
Sbjct 1345 GCCATACGAGGACAAAGATGGAAGAAAGCTGGACGATTGAGGAAGTTGCGTTTA-ACGTT 1403
Query 1304 CCTGGTCTGTCTCTAGATTGCTTTATTCCACCCGCTGATCTTAGGTCTAGTTCGTTAACT 1363
|||||||||||||| ||||||||||| ||||| |||||||||| | | |||| |||||
Sbjct 1404 CCTGGTCTGTCTCTCGATTGCTTTATACCACCAGCTGATCTTAAGACCGGTTCTTTAACC 1463
Query 1364 GAAGCCTCCGAGTACTCGGGTCACGAGGAGAA-AGGGAAGAGTT-CG-A-TCGCATTAG- 1418
||| ||| ||||||| | || ||||| || ||| |||| | | ||||||| |
Sbjct 1464 GAATCCTGCGAGTACCCA---CAAGAGGA-AAGAGGCAAGAACAACACACTCGCATT-GT 1518
Query 1419 CTGCAACAACAGCTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTTGACA-AT 1477
||||| ||||| || || |||||||||||||||||||| || ||||| || | ||
Sbjct 1519 CTGCA------GCTCACAGGGCCAAAGTTGCAGCCTTGGAGAACGGGAGCTTGGA-AGAT 1571
Query 1478 GATC-C--GGTTTGGCATATTGATGTCT 1502
| | | ||||||||||| ||||||||
Sbjct 1572 CACCGCCCGGTTTGGCATACTGATGTCT 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5