BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923419
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49850.1 | Symbols: | RING/U-box superfamily protein | chr1... 1160 0.0
> AT1G49850.1 | Symbols: | RING/U-box superfamily protein | chr1:18455064-18456544
REVERSE LENGTH=1115
Length=1115
Score = 1160 bits (628), Expect = 0.0
Identities = 748/803 (93%), Gaps = 20/803 (2%)
Strand=Plus/Plus
Query 1 GAATTCGGTGATTGATCGGTGCATGACGAGTGCATCGGAACTCTTCTCTACACGAAGATC 60
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 79 GAATTTGGTGATTGATCGGTGCATGACGAGCGCATCGGAACTCTTCTCTACACGAAGATC 138
Query 61 ACGTCCGGGTCGATCCGACCCGGATTTAGAAT-CGAACACTTCTTCTTATCGACACCACG 119
||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||
Sbjct 139 ACGTCCGGGTCGATCCGACCCGGCTTTAGAATCCG-ACACTTCTTCCTATCGACACCAC- 196
Query 120 GT-AC-CCATCATCATCGCCGTCACGGTACCCATCATCATAACCAACGACATGACTCCGA 177
| || ||||||||||||||||||||| |||||||||||| || || ||||| |||||
Sbjct 197 -TCACACCATCATCATCGCCGTCACGGCGTCCATCATCATAATCAGCGTCATGATTCCGA 255
Query 178 CGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTGTCACCA-CC--- 233
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 256 CGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTTTCACCATCCGAT 315
Query 234 -C-GGAAC---GTAGACCTATTCGTGATGTTCAAGGCACTGGTCAGTATTTGAATACGGA 288
| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 316 TCAGGAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTAGTCAGTATTTAAATACGGA 375
Query 289 CAGTACTGATACTGAAACTCAAAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGGCT 348
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 376 TAGTACTGATACTGAAACTCAGAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGGCT 435
Query 349 TCCTGGAGCTGTGCTGCTTGCAAGAGCA-AGACTTTTCGAAAGATTGAGAGGTGTTTCTT 407
|||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 436 TCCTGGAGCTGTTCTGCTTGCAAG-GGATAGACTTTTCGAAAGATTGAGAGGTGTTTCTT 494
Query 408 TGTCTAGTAACAGTCGAGGCAATAGAGTTTCAGTGGGAGATGATCAAAGGGAGTCTTCAT 467
||||||||||||||||| |||| ||||||||| | | ||||||||||||||||||||||
Sbjct 495 TGTCTAGTAACAGTCGAAGCAACAGAGTTTCA-T-TG-GATGATCAAAGGGAGTCTTCAT 551
Query 468 TTCATTCTGTAGATGGTGATCCAATTTTTCAACTAGAAGGGCTTCAAGTGACCTATGAAT 527
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 552 TTCATTCTATAGATGGAGATCCAATTTTTCAACTAGCAGGGCTTCAAGTGACCTATGAAT 611
Query 528 GCAACAAGAAACCACAAGGTCTCACACAAGATGCTATTAACTGTTTACACCGGCAAACTT 587
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 612 GCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGGCAAACTT 671
Query 588 TTAGCTCAGCCGAGGTTAAAACCGAGATGAGGGATTGTAGCATATGTTTAGAGAGTTTCA 647
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 672 TTAGCTCAGCCGAGGTTAAATCCGAGATGAGAGATTGTAGCATATGTTTAGAGAGTTTCA 731
Query 648 CTAAAGGCGACATGCTTATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTTAA 707
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CTAAAGGTGACATGCTAATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTTAA 791
Query 708 ACCCTTGGCTTAAAGCTTGTGGAGATTGTCCTTATTGCCGTAGAGCCATATCTAAGGAAT 767
|||||||||||| |||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 792 ACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTGTTGCCGTAGAGCCATAGCAAAGGAAT 851
Query 768 AGAAACTTGTAAATATAATCTTT 790
||||||||||||||| |||||||
Sbjct 852 AGAAACTTGTAAATAGAATCTTT 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5