BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923422
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49880.1 | Symbols: Erv1 | Erv1/Alr family protein | chr1:18... 883 0.0
> AT1G49880.1 | Symbols: Erv1 | Erv1/Alr family protein | chr1:18464017-18466077
FORWARD LENGTH=803
Length=803
Score = 883 bits (478), Expect = 0.0
Identities = 565/605 (93%), Gaps = 14/605 (2%)
Strand=Plus/Plus
Query 12 aaaaaaaaaGAGAGATGGGTGAGAACCCATGGCAGCCACTTCTGCAGAGCTTCGAGAAAC 71
||| ||||| | ||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 53 AAACAAAAA-A-AGATGGGTGAGAAGCCATGGCAGCCACTACTCCAGAGCTTCGAGAAAC 110
Query 72 TATCAAATTGCGTCCAAACTCATCTTTCCAATTTCATCGGCATCAAG-A-A-------TA 122
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 111 TATCAAATTGCGTCCAAACTCATCTTTCCAATTTCATCGGCATCAAGAATACTCCTCCTA 170
Query 123 ---CTCAATCCAGAATCCAAAACCCAGTCATCTCCTTGGAATCTTCTCCACCAATCGCAA 179
||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 171 GTTCTCAATCCACAATCCAAAACCCAATCATCTCCTTGGACTCTTCTCCGCCAATCGCAA 230
Query 180 CCAACAGTTCCAGTCTTCAGAAACTTCCTCTTAAGGACAAGTCTACAGGTCCTGTGACTA 239
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 231 CAAACAGTTCCAGTCTTCAGAAACTTCCTCTCAAGGACAAGTCTACTGGTCCTGTGACTA 290
Query 240 AAGAGGACCTCGGAAGAGCTACATGGACATTTCTTCATACTCTTGCTGCGCAGTATCCAG 299
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 291 AAGAGGATCTCGGGAGAGCTACATGGACGTTTCTTCACACTCTTGCTGCGCAGTATCCAG 350
Query 300 AAAAACCAACAAGGCAGCAAAAAAGGGATGTTAAAGAATTGATGGCGATACTTTCTCGAA 359
|||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||
Sbjct 351 AAAAACCAACAAGGCAGCAAAAAAAGGATGTTAAAGAGCTGATGACGATACTTTCCCGAA 410
Query 360 TGTACCCTTGTAGAGAATGTGCAGATCACTTCAAAGAAATCCTAAGATCGAATCCCGCAC 419
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 411 TGTATCCTTGTAGAGAATGTGCGGATCACTTCAAAGAAATCCTAAGATCGAATCCCGCAC 470
Query 420 AAGCTGGATCTCAGGAGGAATTCTCGCAGTGGCTTTGCCATGTACACAACACCGTAAATA 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 471 AAGCTGGATCTCAGGAGGAATTCTCACAGTGGCTTTGCCATGTACACAACACCGTAAATA 530
Query 480 GAAGTTTGGGGAAGTTGGTGTTCCCTTGCGAGAGAGTGGATGCAAGATGGGGCAAGTTAG 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGTTTGGGGAAATTGGTGTTCCCTTGCGAGAGAGTGGATGCAAGATGGGGCAAGTTAG 590
Query 540 AGTGTGAGCAGAAAAGTTGTGATCTCCATGGAACTTCAATAGACTTTTAGACCCATTTAT 599
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 591 AGTGTGAGCAGAAAAGTTGTGATCTCCATGGAACTTCTATGGACTTTTAGACCCATTTAT 650
Query 600 TAACT 604
|||||
Sbjct 651 TAACT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5