BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923447
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50090.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1554 0.0
AT1G50110.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1219 0.0
> AT1G50090.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr1:18554641-18556794
REVERSE LENGTH=1104
Length=1104
Score = 1554 bits (841), Expect = 0.0
Identities = 990/1062 (93%), Gaps = 10/1062 (1%)
Strand=Plus/Plus
Query 21 ATGGCTCTTTCTGTGCTCCTTTCTTCATCACCTCTTCTTACAAGTAAAGCCGATGAAAAG 80
||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTCCTTCTGTGCACCCTTCTTCATCACCTCTTTTTACAAGTAAAGCCGATGAAAAG 60
Query 81 TATGCGAATGTAAAATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTAT 140
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TATGCGAATGTAAAATGGGATGAGCTCGGATTCGCACTGGTTCCAACAGATTATATGTAT 120
Query 141 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAAAAGGAGAGATTGTTCCTTATGGAGAT 200
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 121 GTGGCGAAATGCAAACAAGGAGAGAGCTTTTCAACAGGAGAGATTGTTCCTTATGGGGAT 180
Query 201 TTTT-TAATAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCT 259
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTCTA-TAAGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCT 239
Query 260 CAAGGCTTATAGGACAGAAGACGGACGGATCACACTCTTCCGGCCTGACCAAAACGCTCT 319
||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 240 CAAGGCTTACAGGACAGAAGACGGTCGGATCACACTCTTCCGACCTGACCAAAACGCTAT 299
Query 320 TCGTATGCAAACAGGTGCGGATAGGACTT-GTATGACACCTCCTTCTCTGGACCAATTCG 378
|||||||||||||||||| |||||| ||| |||||||||||||||| | ||| |||||||
Sbjct 300 TCGTATGCAAACAGGTGCAGATAGG-CTTTGTATGACACCTCCTTCCCCGGAGCAATTCG 358
Query 379 TCGAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTTCCTCCTCCGGGTAAAG 438
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 359 TTGAAGCAGTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTACCTCCTCCGGGGAAAG 418
Query 439 GAGCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTCGCTTCAG 498
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GAGCTTTGTATATTAGGCCTCTACTCATAGGTACTGGTGCTGTCCTTGGAGTAGCTTCAG 478
Query 499 CACCTGAATATACGTTCCTCATTTACACATCTCCCGTAGGAAATTACCACAAGGCAAGTT 558
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 479 CTCCTGAATATACGTTCCTCATTTACACATCTCCCGTGGGAAATTATCACAAGGCAAGCT 538
Query 559 CAGGCTTGAACCTCATAGTTGATCATAAGCATCGCCGAGCCCACT-CTGGTGGAACAGGG 617
||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 539 CAGGCTTGAACCTCAAAGTTGATCATAACCATCGCCGAGCCCACTTC-GGTGGAACAGGG 597
Query 618 GGTGTGAAAAGCTGCACAAACTATTCTCCAGTTTTGAAATCGTTGATCGAAGCAAAGTCA 677
|||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 598 GGTGTGAAGAGCTGCACAAATTATTCTCCAGTTGTAAAATCGTTGATCGAAGCAAAGTCT 657
Query 678 TCTGGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGCAAAAACATTGAAGAGGTT 737
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 658 TCGGGTTTCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGTAAAAACATCGAAGAGGTT 717
Query 738 TCTACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCACCAACTTCAGGA 797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 TCTACTTGTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCCCCAACTTCAGGA 777
Query 798 ACCATTTTACCAGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTAC 857
|||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||
Sbjct 778 ACCATTTTACCAGGAATCACAAGGAAGAGCATATGTGAGCTAGCCCGTGACATTGGCTAT 837
Query 858 CAGGTTCAAGAACGCGATGTTTCTGTCGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGC 917
||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||| |||
Sbjct 838 GAGGTTCAAGAACGTGATCTTTCTGTGGATGAGCTATTAGAGGCAGAGGAAGTTTTTTGC 897
Query 918 ACTGGGACCGCAATGGTCGTCAAAGCTGTTGAAACCGTGACCCTCCATGACAAAAAGATA 977
|| ||||| ||| ||||| | |||||||||||||||||||| |||||||||||| | ||
Sbjct 898 ACGGGGACGGCAGTGGTCATTAAAGCTGTTGAAACCGTGACATTCCATGACAAAAGGGTA 957
Query 978 AAATACAAGA-CAGGGGAA-AAGGCATTGTCTACGAAGCTTCACTTGATATTAACTAATA 1035
||||| | || |||| ||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 958 AAATATA-GAACAGGAGAAGAAG-CATTCTCTACGAAGCTTCACTTGATATTAACTAATA 1015
Query 1036 TTCAAATGGGAGTTGTGGAAGATAAAAAGGGTTGGATGGTGG 1077
|||||||||||||||| |||||||| |||||||||||| |||
Sbjct 1016 TTCAAATGGGAGTTGTCGAAGATAAGAAGGGTTGGATGATGG 1057
> AT1G50110.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr1:18558017-18560274
REVERSE LENGTH=1312
Length=1312
Score = 1219 bits (660), Expect = 0.0
Identities = 928/1056 (88%), Gaps = 24/1056 (2%)
Strand=Plus/Plus
Query 35 GCTCCTTTCTTCATCACCTCTTC-T--TACAAGT-AAAGCCGATGAAAAGTATGCGAATG 90
||||| ||||||||||||||||| | ||||||| ||| | |||||||| ||||||||||
Sbjct 59 GCTCC-TTCTTCATCACCTCTTCGTACTACAAGTGAAA-CAGATGAAAAATATGCGAATG 116
Query 91 TAAAATGGGACGAGCTGGGATTCGCACTGGTTCCAACAGATTATATGTATGTGGCGAAAT 150
| |||||||| ||||| |||||||| ||| ||||| ||||||||||||||| || ||||
Sbjct 117 TCAAATGGGAAGAGCTTGGATTCGCTCTGACTCCAATAGATTATATGTATGTAGCCAAAT 176
Query 151 GCAAACAAGGAGAGAGCTTTTCA-AAAGGAGAGATTGTTCCTTATGGAGATTTTTTAATA 209
||| |||||||||||||||| || || ||| |||||||||||||||| || ||| |||
Sbjct 177 GCAGACAAGGAGAGAGCTTTACACAAGGGA-AGATTGTTCCTTATGGCGACATTTCAATT 235
Query 210 AGCCCTTGTGCTGGGATTCTCAATTATGGCCAGGGACTATTTGAAGGTCTCAAGGCTTAT 269
||||||||| || |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 236 AGCCCTTGTTCTCCGATTCTCAATTACGGCCAGGGACTATTTGAAGGTCTCAAAGCTTAC 295
Query 270 AGGACAGAAGACGGA-CGGATCA-CACTCTTCCGGCCTGACCAAAACGCTCTTCGTATGC 327
|| ||||||||| || ||||| | | | |||||||||||||||||||||||||| ||||
Sbjct 296 AGAACAGAAGAC-GACCGGATTAGGA-TTTTCCGGCCTGACCAAAACGCTCTTCGCATGC 353
Query 328 AAACAGGTGCGGATAGGAC-TTGTATGACACCTCCTTCTCTGGACCAATTCGTCGAAGCA 386
|||| |||||||| ||| | |||||||||||||||| |||| || ||||| ||||| |||
Sbjct 354 AAACTGGTGCGGAGAGG-CTTTGTATGACACCTCCTACTCTAGAACAATTTGTCGAGGCA 412
Query 387 GTTAAGCAAACTGTGCTTGCCAACAACAAATGGGTTCCTCCTCCGGGTAAAGGAGCTTTG 446
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 413 GTTAAGCAAACTGTGCTTGCCAACAAGAAATGGGTTCCTCCTCCGGGTAAAGGAACTCTG 472
Query 447 TATATTAGGCCTCTACT-CATAGGTACTGGTGCTGTCCTTGGAGTCGCTTCAGCACCTGA 505
||||| |||||||| || | |||| | ||||||| ||||||||| ||| ||||||||||
Sbjct 473 TATATAAGGCCTCTGCTAC-TAGGGAGTGGTGCTACCCTTGGAGTAGCTCCAGCACCTGA 531
Query 506 ATATACGTTCCTCATTTACACATCTCCCGTAGGAAATTACCACAAGGCAAGTTCAGGCTT 565
||| || || ||||| || |||||||||||||| ||||||| |||| ||| ||||||||
Sbjct 532 ATACACTTTTCTCATATATGCATCTCCCGTAGGAGATTACCATAAGGTAAGCTCAGGCTT 591
Query 566 GAACCTCATAGTTGATCATAAGCATCGCCGAGCCCACTCTGGTGGAACAGGGGGTGTGAA 625
|||||||| ||||||||||||| ||| ||||||||| || |||||||| |||||||| ||
Sbjct 592 GAACCTCAAAGTTGATCATAAGTATCACCGAGCCCATTCAGGTGGAACGGGGGGTGTCAA 651
Query 626 AAGCTGCACAAACTATTCTCCAGTTTTGAAATCGTTGA-TCGAAGCAAAGTCATCTGGTT 684
|||||||||||||||||||||||| |||||||||| | |||||||||||||| | ||||
Sbjct 652 GAGCTGCACAAACTATTCTCCAGTTGTGAAATCGTT-ACTCGAAGCAAAGTCAGCGGGTT 710
Query 685 TCTCTGATGTCTTGTTCCTGGATGCGGCAACTGGCAAAAACATTGAAGAGGTTTCTACTT 744
||||||||||| ||||||||||||| |||||||| | |||||| |||||| || || |||
Sbjct 711 TCTCTGATGTCCTGTTCCTGGATGCAGCAACTGGTAGAAACATCGAAGAGCTTACTGCTT 770
Query 745 GTAACATCTTCATTCTAAAGGGAAACATTGTATCCACTCCACCAACTTCAGGAACCATTT 804
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 GTAACATCTTCATTGTCAAGGGAAACATTGTATCCACCCCACCAACTTCAGGAACCATTT 830
Query 805 TACCAGGAATCACAAGGAAAAGCATAAGTGAGCTAGCTCGTGATATTGGCTACCAGGTTC 864
|||| ||| |||| |||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 831 TACCTGGAGTCACGAGGAAAAGCATAAGTGAGCTGGCTCATGATATTGGCTACCAGGT-C 889
Query 865 -AAGAACGCGATGTTTCTGTCGATGAGCTATTAGAGGCAGAAGAAGTTTTCTGCACTGGG 923
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 890 GAAGAACGCGATGTATCTGTGGATGAGCTACTAGAGGCAGAAGAAGTTTTCTGCACAGGG 949
Query 924 ACCGCAATGGTCGTCAAAGCTGTTGAAACCGTGACCCTCCATGACAAAAAGATAAAATAC 983
|| ||| ||||||| |||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 950 ACTGCAGTGGTCGTTAAAGCTGTTGAAACTGTGACCTTCCATGACAAAAAGGTAAAATAC 1009
Query 984 AAGACAGGGGAAA-AGGCATTGTCTACGAAGCTTCACTTGATATTAACTAATATTCAAAT 1042
| |||||| ||| || ||||||||||||||||||||| ||| || || |||||||| ||
Sbjct 1010 AGGACAGGAGAAGCAG-CATTGTCTACGAAGCTTCACTCGATGTTGACCAATATTCAGAT 1068
Query 1043 GGGAGTTGTGGAAGATAA-AAAGGGTTGGATGGTGG 1077
||||||||| |||||||| ||||| |||||||||||
Sbjct 1069 GGGAGTTGTTGAAGATAAGAAAGG-TTGGATGGTGG 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5