BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923452
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50120.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2643 0.0
> AT1G50120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756);
Has 144 Blast hits to 140 proteins in 61 species:
Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants
- 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink). | chr1:18561829-18566172 FORWARD LENGTH=2229
Length=2229
Score = 2643 bits (1431), Expect = 0.0
Identities = 1573/1640 (96%), Gaps = 16/1640 (1%)
Strand=Plus/Plus
Query 1 GAAACACAGCCATTGAAGCGATGCTATCATCAAGGTTTTCTTTTTTGGGGATC-G--G-- 55
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 454 GAAACACAGCCATTGAAGCGATGCTATCATCAAGGTTTTCCTTTTTGGGGATCGGCAGTT 513
Query 56 -CAGTG-A--C--T--CT--GTGGGTGTTTCTGGAAGCAAGATCAAACCATCTCTAACTG 105
||||| | | | || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 514 CCAGTGAAGTCAATGACTCCGTGGGTGTTTCTGGAAGCAAGATCAAACCATCTCTAAGTG 573
Query 106 TGCAAACGGATAAAGATGTCTACAGGCCTGGAGATTCCATTTTTGTAACTATTGAGGTTG 165
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 574 TTCAAACGGATAAAGATGTGTATAGGCCTGGAGATTCCATTTTTGTAACTATTGAGGTTG 633
Query 166 GTAATTCTCACGAGAACGGGTCTAATCCCTCCATTTTGGTTGAAAAGCTTAGTTTTGAGG 225
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTAATTCTCATGACAACGCCTCTAATCCCTCCATTTTGGTTGAAAAGCTTAGTTTTGAGG 693
Query 226 TTAAAGGACTAGAGAAATTGGACATTCAGTGGTTTTCTACTCAAAAGCCATCACCAGGAA 285
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 694 TTAAAGGTCTAGAGAAATTGGACATTCAGTGGTTTTCTACTCAAAAACCTTCACCAGGAA 753
Query 286 GCAAAGCACGAAGAGGTGAACATATCTTCCTAGACAGTTCAACACCATCTTTGATTTCAA 345
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 754 GCAAAGGACGAAGAGGTGAACACATCTTCCTAGACAGTTCAACACCATCTTTGATTTCAA 813
Query 346 ATCAAATCCTATCCCCTGGTGCTAAGATGACATTAATGGTTCGAGCTATACTCCCACAGA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATCAAATCCTATCCCCTGGTGCTAAGATGACATTAATGGTTCGAGCTATACTCCCACAGA 873
Query 406 TTATACCACCTTCTTATAAAGGTGCTACTTTACGTTACCTTTACTACATTAAGAGCACAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTATACCACCTTCTTATAAAGGTGCTACTTTACGTTACCTTTACTACATTAAGAGCACAT 933
Query 466 TATGCGGAAGATGGATGGCGCTAGAAAACAGTCAGTTTTACAAAGACTCAACAAAAGATT 525
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 934 TATGCGGAAGATGGATGGCATTAGAAAACAGTCAATTTTACAAAGACTCAACACAAGATT 993
Query 526 TCATTGAAGTGGAGACTCGAATACCATTACAAGTATGGGTAATTCAGAAGAACAATGGGC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TCATTGAAGTGGAGACTCGAATACCATTACAAGTATGGGTAATTCAGAAGAACAATGGGC 1053
Query 586 TGCTATTAGAGGAAGATCAAACCGATGGGATTGTTCCAACCAGTACCATTCAGACAGACA 645
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 1054 TGCTATTAGAGGAAGATCAAATCGATGGTATTGTTCCAACCAGTACCATTCAGACAGAAA 1113
Query 646 TATATTGGAAAGAGATGGATGGAGACTCAGAATGGACTAGAGCAAATGACGCATATGATA 705
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1114 TATATTGGAAAGAGATGGATGGGGACTCAGAATGGACTAGAGCAAATGACGCATATGATA 1173
Query 706 GTGGTGAGGATGGATATGACAGTTCACGTGACGAGATCTCGTCTGTTTCTTCCTATCCCA 765
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1174 GTGGTGAGGATGGATATGACAGTTCACGTGACGAGATCTCATCTGTTTCTTCCTATCCCA 1233
Query 766 ACAAAAGCAATTTAAACAGAACGTTTGGCAGTTCATTGTCCTTGAATTCTGGACCGCGAT 825
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1234 ACAAAAGCAATTTAAACAGAACATTTGGCAGTTCATTGTCCTTGAATTCTGGACCGCGAT 1293
Query 826 TATCAATGAAAGACACATCATATGTTGAAGAACGTGTTGGATCGTCTCCAAAGATGATGC 885
| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1294 TGTCAATGAAAGACACGTCATATGTTGAAGAACGTGTGGGATCATCTCCAAAGATGATGC 1353
Query 886 TTTCTCAGTTATCAGCTGCCGTGGTGTCTTATGATTCCGGAACCGATGTCTCTTCGCCTC 945
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1354 TTTCTCAGTTATCAGCTGCCGTGGTGTCTTATGATTCCGGAACTGATGTATCTTCCCCTC 1413
Query 946 ATAAATCATCAAATTCTGTGGTCCCGAGCCAACAGCCTAAGCAAACAAATGGCGCAGGAG 1005
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1414 ATAAATCATCAAATTCTGTGGTCCCGAGCCAACAGCCCAAGCAAACAAATGGTGCAGGAG 1473
Query 1006 CATCTATGTCGCCTGAAGCAGGAGCAAAAGAACCAGTTCCATCAGAAGGATTTACAAGAG 1065
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1474 CATCTATGTCGCCTGGAGCAGGAGCAAGAGAACCAGTTCCATCAGAAGGATTTACAAGAG 1533
Query 1066 GAAGATCTTACAACATTAGAATGGATGACCAAGTCCTTCTTAGGTTTTCCCCCAAGAATG 1125
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GAAGATCATACAACATTAGAATGGATGACCAAGTCCTTCTTAGGTTTTCCCCCAAGAATG 1593
Query 1126 CCGACTCTACTTATTACTTCAGCGATACTATAGGTGGAACTCTTACGTTCTTCCATGAAG 1185
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1594 CCGATTCTACTTATTACTTCAGCGATACTATAGGTGGAACTCTTACATTCTTCCATGAAG 1653
Query 1186 AAGGAACCAGAAGATGCCTCGAGGTCTCGGTTACTCTAGAAACTTTAGAGACAATAAACA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 AAGGAACCAGAAGATGCCTCGAGGTCTCGGTTACTCTAGAAACTTTAGAGACAATAAACA 1713
Query 1246 GGAGATTTGTTCATCCATCAAGGAGAAATTCTCCAACGCTTACTAAGGTCCAAAGCGATC 1305
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1714 GGAGATTTGTTCATCCATCAAGGAGAAATTCTCCAACACTTACTAAGGTCCAAAGCGATC 1773
Query 1306 ACCATGAGGTGGTGGCAGACCTTATTCAAACCAGCTTTCTATTTTCAATTCCCACGGATG 1365
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1774 ACCATGAGGTGGTGGCAGACCTTATTCAAACCAGCTTTCTATTTTCAATTCCGACGGATG 1833
Query 1366 GTCCAATGTCGTTTTCTACGCCCCATGTTTCTGTGCAATGGATTCTTCGGTTTGAGTTCC 1425
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1834 GTCCAATGTCGTTTTCTACGCCCCGTGTTTCTGTGCAATGGATTCTTCGGTTTGAGTTCC 1893
Query 1426 TAACTACTCCAAAGAGTGTGGACTTAAGCAGGTACGAACATCCATTGTTAGTACCGGAAC 1485
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 TAACTACTCCTAAGAGTGTGGACTTAAGCAGGTACGAACATCCATTGTTAGTACCGGAAA 1953
Query 1486 GGGAAAAAAGCGAATGGGTTCTTCCGATTACTGTACATGCACCGCCGCCTCGAACATCAG 1545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1954 GGGAAAAAAGCGAATGGGTTCTTCCGATTACTGTACATGCACCGCCGCCTCGGACATCAG 2013
Query 1546 GTGCTCAAACCCGTGGAGATAAGTTTTTTGGTTTGGAGCCGTCTTGGATTCGTAGCTAAA 1605
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2014 GTGCTCAAAACCGTGGAGATAAGCTTTTTGGTTTGGAGCCGTCTTGGATTCGTAGCTAAA 2073
Query 1606 CCACGCTTTTGGTGAAAGAT 1625
| ||||||||||||||
Sbjct 2074 TTT-GTTTTTGGTGAAAGAT 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5