BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923453 Length=483 Score E Sequences producing significant alignments: (Bits) Value AT5G10160.1 | Symbols: | Thioesterase superfamily protein | ch... 361 4e-99 > AT5G10160.1 | Symbols: | Thioesterase superfamily protein | chr5:3185746-3187312 FORWARD LENGTH=886 Length=886 Score = 361 bits (195), Expect = 4e-99 Identities = 249/275 (91%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 9 GATCGAATCGGCAATGGCTGCTTCCAGCTCCGTTTTCACAACCTCTCCGTCGCGAAATCT 68 |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| Sbjct 61 GATCGAATCGGCAATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAATCT 120 Query 69 TTC-TCTTA-TCCGTCTTCATCAGTCGCTATCTCCACCGTTGATCAGATCCAGCTCCGTC 126 | | | || ||| |||||||||||| ||||||||||||||| | ||||||||||||||| Sbjct 121 TGCAGC-TATTCC-TCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTC 178 Query 127 GCGTTTCGTCCCAAACGACGATCCAGCTCGCTCGTCTTGTGCTCCACTGATGAATCAAAG 186 |||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||| Sbjct 179 GCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAG 238 Query 187 AGCAACACAGAGAAAGAGATCCCAATTGAACTCAGGTACGAGGCTTTTCCAACGGTGATG 246 |||| | ||||||||||||||||||| ||||| ||||| ||||| ||||| || |||||| Sbjct 239 AGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATG 298 Query 247 GACATCAATAAGATACAAGAGATTTTGCCTCACAG 281 ||||||||||||||||||||||||||||||||||| Sbjct 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAG 333 Score = 141 bits (76), Expect = 6e-33 Identities = 108/122 (89%), Gaps = 8/122 (7%) Strand=Plus/Plus Query 277 CACAGCTGGTGTATCTGCGGTACGGTAGCTATTAAAAACGATACCCTCATGGTTGACAAT 336 |||||||||||||||| | |||||||||||||||||| || | ||| ||||||| Sbjct 370 CACAGCTGGTGTATCT---G--CGGTAGCTATTAAAAACGTTA--C-CATTAATGACAAT 421 Query 337 TTCTTTCCTGGGCATTTTCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGTA 396 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 422 TTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGCA 481 Query 397 AT 398 || Sbjct 482 AT 483 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23007239326 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5