BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923453

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10160.1 | Symbols:  | Thioesterase superfamily protein | ch...   361    4e-99


> AT5G10160.1 | Symbols:  | Thioesterase superfamily protein | 
chr5:3185746-3187312 FORWARD LENGTH=886
Length=886

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 249/275 (91%), Gaps = 4/275 (1%)
 Strand=Plus/Plus

Query  9    GATCGAATCGGCAATGGCTGCTTCCAGCTCCGTTTTCACAACCTCTCCGTCGCGAAATCT  68
            |||||||||||||||||||||||| |||||||||||||||   || ||||||||||||||
Sbjct  61   GATCGAATCGGCAATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAATCT  120

Query  69   TTC-TCTTA-TCCGTCTTCATCAGTCGCTATCTCCACCGTTGATCAGATCCAGCTCCGTC  126
            | |  | || ||| |||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct  121  TGCAGC-TATTCC-TCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTC  178

Query  127  GCGTTTCGTCCCAAACGACGATCCAGCTCGCTCGTCTTGTGCTCCACTGATGAATCAAAG  186
            |||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||
Sbjct  179  GCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAG  238

Query  187  AGCAACACAGAGAAAGAGATCCCAATTGAACTCAGGTACGAGGCTTTTCCAACGGTGATG  246
            |||| | ||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct  239  AGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATG  298

Query  247  GACATCAATAAGATACAAGAGATTTTGCCTCACAG  281
            |||||||||||||||||||||||||||||||||||
Sbjct  299  GACATCAATAAGATACAAGAGATTTTGCCTCACAG  333


 Score =  141 bits (76),  Expect = 6e-33
 Identities = 108/122 (89%), Gaps = 8/122 (7%)
 Strand=Plus/Plus

Query  277  CACAGCTGGTGTATCTGCGGTACGGTAGCTATTAAAAACGATACCCTCATGGTTGACAAT  336
            ||||||||||||||||   |  |||||||||||||||||| ||  | |||   |||||||
Sbjct  370  CACAGCTGGTGTATCT---G--CGGTAGCTATTAAAAACGTTA--C-CATTAATGACAAT  421

Query  337  TTCTTTCCTGGGCATTTTCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGTA  396
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct  422  TTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGCA  481

Query  397  AT  398
            ||
Sbjct  482  AT  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5