BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923459 Length=587 Score E Sequences producing significant alignments: (Bits) Value AT1G50190.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 580 4e-165 > AT1G50190.1 | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr1:18588229-18590799 REVERSE LENGTH=1860 Length=1860 Score = 580 bits (314), Expect = 4e-165 Identities = 487/569 (86%), Gaps = 17/569 (3%) Strand=Plus/Plus Query 1 AGCCGAGAATGTTGTGGTTACATGTACAAGTGCTGCGAAAAGGGTTGTGAATTTCAAATA 60 ||||||||||||||||||| |||||||||||| || ||||||| |||||| |||||| || Sbjct 1126 AGCCGAGAATGTTGTGGTTTCATGTACAAGTGTTGTGAAAAGGATTGTGACTTTCAACTA 1185 Query 61 GATGCAAGATGCGCTTCACTTACTGATCCTATAATCCATGACTGCGATCCACATGATCAC 120 |||||||| || ||||| ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1186 GATGCAAGGTGTGCTTCGCTTCCTGATCCTATAATCCATGACTGCCATCCACATGATCAC 1245 Query 121 CCGT-TATTCATCAATTTGACCAAAGGTGAATGCATGGCTTGTAAGTCTTCCA-CCTGCT 178 || | | ||| ||||||||||| ||||||||||||||| ||||||| || || || | | Sbjct 1246 CC-TCTCTTCTTCAATTTGACCGAAGGTGAATGCATGGTTTGTAAG-ATTACATCCGGAT 1303 Query 179 CATCTATGTACCTAGAATGTATCGAATGCCAGCT-CTTTTTGGGTCTTAAATGTGCTACT 237 | | |||| |||||||||| ||||| ||| | ||||| | |||||| ||||||||| Sbjct 1304 TAAGAAAGTACTTAGAATGTATTGAATG-CAGGTCCTTTTCGTGTCTTACTTGTGCTACT 1362 Query 238 CTGCCTACT-GTGGTTCACTATAAGCACGATAAACATCCACTCACTTTTTGCTGCGGAGA 296 ||||| || |||| |||||| ||| |||||||||||||||||||| ||||||| ||||| Sbjct 1363 ATGCCT-CTGGTGGCTCACTACAAGTACGATAAACATCCACTCACTCTTTGCTGTGGAGA 1421 Query 297 AGAGAAGACAACAGATCCCCAGTATTGGTGCGAGATCTGTGAAACA-AAACTAGATGCTA 355 ||| ||||||| ||||| |||||||||||||||||| |||||| || ||| ||||||| | Sbjct 1422 AGAAAAGACAAAAGATCTCCAGTATTGGTGCGAGATTTGTGAATCAGAAA-TAGATGC-A 1479 Query 356 C-AAAGTGGTTCTATACATGCAACTCTTGTTCAGTCACTCTTCATGTTACATGCTTACTG 414 | |||||||||||| ||||||| || |||||| |||||||||||||||||||| |||||| Sbjct 1480 CAAAAGTGGTTCTACACATGCAGCTATTGTTCTGTCACTCTTCATGTTACATGTTTACTG 1539 Query 415 GGTGATAGGGTCTACATGAAGCCAAACCATATGATCAGGATGCATAAAGGTGCTGAAA-- 472 || |||| ||||||||||||||||||||||||||||| |||| | ||||||| ||| Sbjct 1540 GGAGATAAGGTCTACATGAAGCCAAACCATATGATCAAGATGTACGAAGGTGCAAAAACA 1599 Query 473 -GTATTCTTATTGTATCCAACAGTGGCAACTCTAGACCAGTGTGTAATGGATGTA-AACG 530 ||||| ||||||| |||||||||| |||||||||||| ||||| ||||||||| || | Sbjct 1600 AGTATTGGTATTGTACCCAACAGTGGTAACTCTAGACCAATGTGTGATGGATGTAGAA-G 1658 Query 531 CTGTTGCGTAGACACTATGGTAGTCAAGA 559 | |||| || |||||| |||||||||||| Sbjct 1659 CCGTTGTGTGGACACTTTGGTAGTCAAGA 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28231590614 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5