BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923459
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50190.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 580 4e-165
> AT1G50190.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:18588229-18590799 REVERSE LENGTH=1860
Length=1860
Score = 580 bits (314), Expect = 4e-165
Identities = 487/569 (86%), Gaps = 17/569 (3%)
Strand=Plus/Plus
Query 1 AGCCGAGAATGTTGTGGTTACATGTACAAGTGCTGCGAAAAGGGTTGTGAATTTCAAATA 60
||||||||||||||||||| |||||||||||| || ||||||| |||||| |||||| ||
Sbjct 1126 AGCCGAGAATGTTGTGGTTTCATGTACAAGTGTTGTGAAAAGGATTGTGACTTTCAACTA 1185
Query 61 GATGCAAGATGCGCTTCACTTACTGATCCTATAATCCATGACTGCGATCCACATGATCAC 120
|||||||| || ||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1186 GATGCAAGGTGTGCTTCGCTTCCTGATCCTATAATCCATGACTGCCATCCACATGATCAC 1245
Query 121 CCGT-TATTCATCAATTTGACCAAAGGTGAATGCATGGCTTGTAAGTCTTCCA-CCTGCT 178
|| | | ||| ||||||||||| ||||||||||||||| ||||||| || || || | |
Sbjct 1246 CC-TCTCTTCTTCAATTTGACCGAAGGTGAATGCATGGTTTGTAAG-ATTACATCCGGAT 1303
Query 179 CATCTATGTACCTAGAATGTATCGAATGCCAGCT-CTTTTTGGGTCTTAAATGTGCTACT 237
| | |||| |||||||||| ||||| ||| | ||||| | |||||| |||||||||
Sbjct 1304 TAAGAAAGTACTTAGAATGTATTGAATG-CAGGTCCTTTTCGTGTCTTACTTGTGCTACT 1362
Query 238 CTGCCTACT-GTGGTTCACTATAAGCACGATAAACATCCACTCACTTTTTGCTGCGGAGA 296
||||| || |||| |||||| ||| |||||||||||||||||||| ||||||| |||||
Sbjct 1363 ATGCCT-CTGGTGGCTCACTACAAGTACGATAAACATCCACTCACTCTTTGCTGTGGAGA 1421
Query 297 AGAGAAGACAACAGATCCCCAGTATTGGTGCGAGATCTGTGAAACA-AAACTAGATGCTA 355
||| ||||||| ||||| |||||||||||||||||| |||||| || ||| ||||||| |
Sbjct 1422 AGAAAAGACAAAAGATCTCCAGTATTGGTGCGAGATTTGTGAATCAGAAA-TAGATGC-A 1479
Query 356 C-AAAGTGGTTCTATACATGCAACTCTTGTTCAGTCACTCTTCATGTTACATGCTTACTG 414
| |||||||||||| ||||||| || |||||| |||||||||||||||||||| ||||||
Sbjct 1480 CAAAAGTGGTTCTACACATGCAGCTATTGTTCTGTCACTCTTCATGTTACATGTTTACTG 1539
Query 415 GGTGATAGGGTCTACATGAAGCCAAACCATATGATCAGGATGCATAAAGGTGCTGAAA-- 472
|| |||| ||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct 1540 GGAGATAAGGTCTACATGAAGCCAAACCATATGATCAAGATGTACGAAGGTGCAAAAACA 1599
Query 473 -GTATTCTTATTGTATCCAACAGTGGCAACTCTAGACCAGTGTGTAATGGATGTA-AACG 530
||||| ||||||| |||||||||| |||||||||||| ||||| ||||||||| || |
Sbjct 1600 AGTATTGGTATTGTACCCAACAGTGGTAACTCTAGACCAATGTGTGATGGATGTAGAA-G 1658
Query 531 CTGTTGCGTAGACACTATGGTAGTCAAGA 559
| |||| || |||||| ||||||||||||
Sbjct 1659 CCGTTGTGTGGACACTTTGGTAGTCAAGA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5