BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923463
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-... 3572 0.0
AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular proteas... 1718 0.0
> AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-18617063
REVERSE LENGTH=2473
Length=2473
Score = 3572 bits (1934), Expect = 0.0
Identities = 2163/2271 (95%), Gaps = 26/2271 (1%)
Strand=Plus/Plus
Query 4 GAAGAAGAAGAAACAGAGCTGCTTCAATGGCGGCCACAGCTTCTAACTCATTACTACG-- 61
|||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 108 GAAGAAGAAGAAACAGAGCTGCTTCAAT----G-----GCTTCTAACTCATTACTACGTT 158
Query 62 -TTCTTCAAA--T-TTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 117
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CTTCTTCAAATTTCTTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 218
Query 118 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGCCTCCCGTGCAAAATACCAAATCACTCGAT 177
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 219 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGTCTCCCGTGCTAAATACCAAATCACTCGAT 278
Query 178 CGTCTCTAGAC-AACAATTCTCCAAATGGTAAACCCAATTCGCCACTCTCGTCGCAAGTT 236
|||||| |||| || ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 279 CGTCTCAAGACGAA-AATTCGCCAAATGGTAAACCCAATTCGCCATTCTCGTCGCAAGTA 337
Query 237 GCTTTAGCAGCTATTCTGTTCTCTTCAATTTCATCATCTCCGCCGCGAGCTTTAGCTGTA 296
|| |||||||||||||| | |||||||||||||| | | |||||| |||||||||||||
Sbjct 338 GCCTTAGCAGCTATTCTACTATCTTCAATTTCATC-T-T-CGCCGCTAGCTTTAGCTGTA 394
Query 297 GTGGACGAACCAGCTTCTCCGTCTCTCGTTGTGGAAGCTCAAGCTCAAGCAGTGAAGCCA 356
|||||||||||||||||||||||| ||||| | || || ||||||| |||||||||
Sbjct 395 GTGGACGAACCAGCTTCTCCGTCTGTCGTTAT---AG---AATCTCAAGCTGTGAAGCCA 448
Query 357 TCGACGTCATCGCCGTTGTTCATTCAGAACGAGATACTTAAAGCACCTAGTCCTAAATCA 416
|||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 449 TCGACGCCATCGCCATTGTTCATTCAGAACGAGATACTTAAGGCTCCTAGTCCTAAATCA 508
Query 417 TCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGAAGAAA 476
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 509 TCGGATCTCCCAGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCTGTGAAGAAA 568
Query 477 GGTAAGGTGGAGAGAGTTAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTTACTGCTGTC 536
|| || || ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 569 GGGAAAGTCGAGAGAGTTAGATTCAGCAAAGATGGTTCTGTTGTTCAGCTTACTGCCGTC 628
Query 537 GACAATCGCCGTGCCTCCGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 596
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GACAATCGCCGTGCTTCAGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 688
Query 597 ATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGACTTGTTCACT 656
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 689 ATGAACGGAGTTGATATATCCGTCTCTGAAGGAGAATCCTCAGGCAATGACTTGTTCACT 748
Query 657 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 808
Query 717 CGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTCCTATGGATTTCGGA 776
||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 809 CGAGCTCAGGGAGGCCCTGGTGGTGGTCCTGGTGGCTTGGGTGGTCCTATGGATTTCGGA 868
Query 777 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCATTCGCAGATGTTGCT 836
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 869 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTATCATTTGCAGATGTTGCT 928
Query 837 GGTGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGGGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 988
Query 897 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 1048
Query 957 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGGAGTACCGTTCTTTTCT 1016
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1049 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGTGCCGTTCTTCTCT 1108
Query 1017 TGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGCATCTAGAGTTAGGGAT 1076
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1109 TGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATCGAGAGTTAGGGAT 1168
Query 1077 TTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCATTGATGAGATTGATGCT 1136
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1169 TTGTTCGAGAAGGCTAAGTCTAAAGCCCCTTGTATTGTATTCATTGATGAGATTGACGCT 1228
Query 1137 GTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GTGGGTAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1288
Query 1197 AATCAGTTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1256
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AATCAGCTGTTGACAGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1348
Query 1257 GCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGCCTGGAAGGTTTGATCGA 1316
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1349 GCTACGAATAGGCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGA 1408
Query 1317 CAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTCCAGGTTCATTCT 1376
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1409 CAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGGTTCATTCT 1468
Query 1377 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCGAGGAGGACCCCCGGT 1436
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1469 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCCAGAAGGACCCCTGGT 1528
Query 1437 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCAGCCAGGCGT 1496
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1529 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCGGCTAGGCGT 1588
Query 1497 GAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1556
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 GAGCTTAAGGAAATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1648
Query 1557 CCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGAGACTTGTTGCATACCATGAG 1616
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1649 CCTGAGAAGAAGAATGCAGTTGTCTCTGAAGAGAAGAAGAGACTTGTTGCATACCATGAG 1708
Query 1617 GCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATGATCCGGTTGCAAAGATTTCC 1676
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1709 GCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAATATGATCCGGTTGCAAAGATTTCT 1768
Query 1677 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttGCTCCAAGCGAAGAAAGACTT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACTTTTTTTGCTCCAAGCGAAGAAAGACTT 1828
Query 1737 GAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAATGGCTGTTGCACTTGGCGGA 1796
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1829 GAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGCGGA 1888
Query 1797 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACCGGAGCATCAAATGAT 1856
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1889 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACTGGAGCATCAAATGAT 1948
Query 1857 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGCTTCAGCAAAAAG 1916
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1949 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGGTTCAGCAAAAAG 2008
Query 1917 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTTATGGGTCAACAAATGTCA 1976
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2009 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTCATGGGTCAACAAATGTCA 2068
Query 1977 TCACAGAAAGATTACTCAATGGCAACTGCAGATATTGTAGATGCTGAGGTGCGAGAGTTA 2036
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2069 TCACAGAAAGATTACTCAATGGCAACTGCGGATATTGTAGATGCTGAGGTGCGAGAGTTA 2128
Query 2037 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2188
Query 2097 AAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTGACGGCGAAGAGTTCATGAGCCTC 2156
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2189 AAGCTTGCACAGCTCCTGATCGAGAAAGAAACTGTTGACGGTGAAGAGTTCATGAGTCTC 2248
Query 2157 TTTATTGACGGCCAAGCTGAGTTGTATATATCTTGATTCCTCAAAGTTGTCATTGCTTAG 2216
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2249 TTTATTGACGGCCAAGCTGAGTTGTATATTTCTTGATTCCTCAAAGTTGCCATTGCTTAG 2308
Query 2217 TGCTTACAATATCATTAGCTTATAAGTATATTTGTGTTCATATGTGTCACC 2267
||||||||||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 2309 TGCTTACAATACCATAAGCTAATAAGTATATTCGTGTTCATATGTGTCACC 2359
> AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease
family | chr5:16902486-16905294 FORWARD LENGTH=2480
Length=2480
Score = 1718 bits (930), Expect = 0.0
Identities = 1516/1798 (84%), Gaps = 44/1798 (2%)
Strand=Plus/Plus
Query 412 AATCATCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGA 471
||||||| ||||||||||| ||| |||| ||||||||||| |||||||| || || ||||
Sbjct 514 AATCATCAGATCTTCCTGATGGAACACAATGGCGATACAGTGAGTTTCTAAATGCTGTGA 573
Query 472 AGAAAGGTAAGGTGGAGAGAGT-TAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTT-AC 529
|||||||||| || |||||||| || || || ||||| ||||||||| ||||| || ||
Sbjct 574 AGAAAGGTAAAGTTGAGAGAGTGAAG-TTTAGTAAAGATGGTTCTGTTCTTCAG-TTAAC 631
Query 530 TGCTGTCGACAATCGCCGTGCCT-CCGTCATCGTCCCTAACGACCCTGACCTT-ATTGAT 587
||||| || ||||| |||| || | || || || ||||| || ||||| || ||||||
Sbjct 632 AGCTGTTGATAATCGTCGTG-CTACTGTTATTGTTCCTAATGATCCTGA-TTTGATTGAT 689
Query 588 ATCTTGGCTATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGAC 647
|||||||| ||||| || ||||||||||| ||||||||||||||| ||| ||||
Sbjct 690 ATCTTGGCGATGAATGGTGTTGATATATCTGTTTCTGAAGGAGAA---GGTGGAAATGGG 746
Query 648 TTG-TTCACTGTCATTGGAAACTTGATTTTCCCGCTT-TTGGCCTTTGGTGGACTCTTCT 705
||| || | | ||||||| || ||| |||| || || ||||| ||||| || | || |
Sbjct 747 TTGTTTGA-TTTCATTGGTAATTTGCTTTTTCC-TTTGTTGGCTTTTGGAGGGTTGTT-T 803
Query 706 T-GCT-TTTCAG-GCGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTC 762
| || ||| || | ||| ||| || ||| |||||||| |||||||| || || ||||
Sbjct 804 TATCTCTTT-AGAG-GAGGTCAAGGAGGTGCTGGTGGT---CCTGGAGGTTTAGGAGGTC 858
Query 763 CTATGGATTTCGGACGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCAT 822
|||||||||||||| | || ||||| ||||| |||||||||||||| || |||||| |||
Sbjct 859 CTATGGATTTCGGAAGATCGAAATCGAAGTTTCAGGAAGTGCCTGAAACCGGTGTGACAT 918
Query 823 TCGCAGATGTTGCTGGTGCTGATCAAGCTAAG-TTGGAGTTACAGGAAGTTGTGGATTTC 881
| | ||||||||||| ||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 919 TTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCTT-GAGTTACAAGAAGTTGTTGATTTC 977
Query 882 TTGAAGAATCCTGATAAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTT 941
|||||||||||||||||||| || || || |||||||||||||||||||| |||||| ||
Sbjct 978 TTGAAGAATCCTGATAAGTATACTGCGTTAGGTGCTAAGATTCCTAAAGGTTGTTTG-TT 1036
Query 942 -GTTGGACCGCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGG 1000
||||| || || |||||||| ||||| || ||||||| || |||||||| ||||| ||
Sbjct 1037 GGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGG 1096
Query 1001 AGTACCGTTCTTTTCTTGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGC 1060
||| ||||||||||| || || || ||||||||||| ||||||||||| |||||||||||
Sbjct 1097 AGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGC 1156
Query 1061 ATCTAGAGTTAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCAT 1120
||||||||||||||||| || |||||||| || |||||||| ||||||||||| || ||
Sbjct 1157 TTCTAGAGTTAGGGATTTATTTGAGAAGGCGAAATCGAAAGCTCCTTGTATTGTGTTTAT 1216
Query 1121 TGATGAGATTGATGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGA 1180
|||||||||||||||||| || || || ||||||||||||||||| || |||||||||||
Sbjct 1217 TGATGAGATTGATGCTGTTGGTAGACAAAGAGGAGCTGGGATGGGTGGTGGAAATGATGA 1276
Query 1181 GAGAGAACAGACTATTAATCAG-TTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTG 1239
||| |||||||||||||||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct 1277 GAGGGAACAGACTATTAATCAGCTT-TTGACTGAGATGGATGGGTTTTCTGGTAACTCTG 1335
Query 1240 GTGTGATAGTTTTGGCAGCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGC 1299
|||| || || ||||| || |||||||| ||||| |||||||| || || || |||| |
Sbjct 1336 GTGTCATTGTGTTGGCTGCCACTAATAGACCGGATGTTCTTGACTCCGCGTTGCTGAGAC 1395
Query 1300 CTGGAAGGTTTGATCGACAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAG-TCAAG 1358
|||| || ||||| || || || || ||||||||||||||||| || || |||| || ||
Sbjct 1396 CTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCCGGAAGAGTTC-AG 1454
Query 1359 ATTCTCCAGGTTCATTCTAGGGGGAAGGC-ACTCGGTAAAGATGTGGACTT-TGACAAGG 1416
|| || |||| |||||||| || || || | | || || ||||| || || || || |
Sbjct 1455 ATCCTTAAGGTGCATTCTAGAGGAAAAGCTA-TTGGGAAGGATGTTGA-TTACGAAAAAG 1512
Query 1417 TTGCGAGGAGGACCCCCGGTTTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGG 1476
|||||||||| || || |||||||| |||||||| || || ||||||||||||||||| |
Sbjct 1513 TTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTGCAGAACCTGATGAATGAAGCTG 1572
Query 1477 CGATTCTTGCAGCCAGGCGTGAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTC 1536
|||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1573 CGATTCTTGCTGCTAGACGTGAGCTTAAGGAGATAAGCAAGGATGAAATATCTGATGCTC 1632
Query 1537 TTGAGAGGATCATTGCTGGACCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGA 1596
||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |
Sbjct 1633 TTGAGAGGATCATTGCTGGACCTGAAAAGAAGAACGCTGTTGTCTCTGAGGAGAAGAAAA 1692
Query 1597 GACTTGTTGCATACCATGAGGCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATG 1656
|||||||||| |||||||||||||| |||||| |||| ||||| ||||||||||| ||||
Sbjct 1693 GACTTGTTGCTTACCATGAGGCTGGGCATGCTTTAGTTGGTGCACTTATGCCGGAGTATG 1752
Query 1657 ATCCGGTTGCAAAGATTTCCATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttG 1716
|||| || || ||||| || || ||||| ||||||||||||||||||||||| ||||| |
Sbjct 1753 ATCCAGTGGCCAAGATATCGATTATTCCACGTGGCCAAGCTGGTGGGCTCACCTTTTTCG 1812
Query 1717 CTCCAAGCGAAGAAAGACTTGAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAA 1776
|||| |||||||| || || ||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 1813 CTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCAGAAGCTACCTTGAGAACCAAA 1872
Query 1777 TGGCTGTTGCACTTGGCGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGA 1836
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1873 TGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGATCTTTGGAGACGAGAATGTGA 1932
Query 1837 CGACCGGAGCATCAAATGATTTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGA 1896
| |||||||||||||||||||||||||| ||||| || ||||| || |||||| ||||||
Sbjct 1933 CAACCGGAGCATCAAATGATTTCATGCAAGTGTCGCGGGTGGCTCGCCAAATGGTTGAGA 1992
Query 1897 GATTTGGCTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCT 1956
|||| || |||||||||||||||||||||||||| |||||||| | || ||||| ||||
Sbjct 1993 GATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAA-CCCT 2051
Query 1957 TTAT-GGGTCAACAA-ATGTCATCACAGAAAGATTACTCAATGGCAACTGCAGATATTGT 2014
|| | ||||||| | |||||||| ||||| |||||||| |||||||| || ||| | ||
Sbjct 2052 TTCTTGGGTCAA-AGTATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGT 2110
Query 2015 AGATGCTGAGGTGCGAGAGTTAGTTGAGAAGGCATACAAGAGAGC-AACGGAGATCATAA 2073
||||| || ||| ||||| | ||||||||||| ||| |||||| || | |||||||||
Sbjct 2111 TGATGCGGAAGTGAGAGAGCTCGTTGAGAAGGCGTACGTGAGAGCGAAAG-AGATCATAA 2169
Query 2074 CAACTCATATTGATATCCTACACAAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTG 2133
|||| || |||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2170 CAACACAAATTGATATCCTACACAAGCTTGCACAGCTCCTTATTGAGAAAGAAACTGTGG 2229
Query 2134 ACGGCGAAGAGTTCATGAGCCTCTTT-ATTGACGGCCAAGCTGAGTTGTATATATCTT 2190
| || |||||||||||||| || ||| |||||||| ||||| ||||| ||| | ||||
Sbjct 2230 ATGGAGAAGAGTTCATGAGTCT-TTTCATTGACGGACAAGCCGAGTTATATGTTTCTT 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5