BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923469

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1...   226    1e-58


> AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 
1 | chr4:16774195-16776325 REVERSE LENGTH=1495
Length=1495

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 150/164 (91%), Gaps = 0/164 (0%)
 Strand=Plus/Plus

Query  130  AAGGCGATCACAAAGTTCCGTTCGGAGGGTATTGCAGAGTATGCTTTTGAGTATGCCTAC  189
            |||| |||||| |||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct  600  AAGGTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTAC  659

Query  190  CTCAACAACAGGAAGAAAATTGCAGCGGTGCATAAGGCTAACATCATGAAACCTGCAGAT  249
            || ||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||
Sbjct  660  CTGAACAACAGGAAGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGAT  719

Query  250  TGTTTGTTCTTGCTATCTTGTCGCGAGGTTGCTAAAAAGTATCC  293
             |||||||||||  |||||||||||||||||| |||||||||||
Sbjct  720  GGTTTGTTCTTGGAATCTTGTCGCGAGGTTGCGAAAAAGTATCC  763



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5