BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923472
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50280.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2446 0.0
AT3G19850.1 | Symbols: | Phototropic-responsive NPH3 family pr... 726 0.0
AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 579 4e-164
> AT1G50280.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr1:18623698-18626395 REVERSE LENGTH=1840
Length=1840
Score = 2446 bits (1324), Expect = 0.0
Identities = 1530/1627 (94%), Gaps = 24/1627 (1%)
Strand=Plus/Plus
Query 1 CTTCATAGTTGTTCTATGAAATGTCTCCTCTCAACGATCTTAAGATCAATCTCAATGGCC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 CTTCCTAGTTGTTCTATGAAATGTCTCCTCTCAACGATCTTAAGATCAATCTCAATGGCC 143
Query 61 AATACACATTCTTCCTCAATCAGGACGTGATTTCAAAGTACTCTGGAAGTTTGAGGAAGA 120
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 144 AATACACATTCTTCCTCAATCAGAACGTGATTTCAAAGTACTCTGGAAGCTTGAGGAAGA 203
Query 121 TGATTAAACAGAGCAAAAGGAAGAGAAACAAGAAAAAGAGAATCATCACTATCGAGATTG 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TGATTAAACAGAGCAAAAAGAAGAGAAACAAGAAAAAGAGAATCATCACTATCGAGATTA 263
Query 181 ATGATTTTCCTGGTGGACCAGATGGGTTTGAGCTGGTTTCAAGGTTCTGTTACAACAACG 240
|||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 264 ATGATTTTCCAGGAGGACCAGATGGGTTTGAGCTGGTTTCAAGGTTCTGTTACCACAACG 323
Query 241 GAGAAATCTCAATCGATGTCTCAAATGTCTCGACTTTGTACTGCTGCTCTGTTTTTCTAG 300
||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 324 GAGAAATCTTAATCGACGTCTCAAACGTCTCGACTTTGTACTGCTGCTCTGTTTTTCTAG 383
Query 301 CCATGTCGGAGAAGTTCTGTTTCTCTAATCTCTTCCTTCAGACCGAGAAGTTTCTAGAAG 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 384 GCATGTCGGAGAAGTTCTGTTTCTCTAATCTCTTCCTTCAGACAGAGAAGTTTCTAGAAG 443
Query 361 AAGTGTTATATGGGTCTTGGAGCGACATCGTTTTGTGTCTCAAGAACTGCGAGCAAGTGT 420
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 AAGTGTTCTATGGGTCTTGGAGCGACATCGTTTCGTGTCTCAAGAACTGCGAGCAAGTGT 503
Query 421 TCTTCCAAGCAGATTCGTATGGTCTTGTAGATAAACTCATCTTCGCAGCTTTGACCAAAA 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 504 TCTTCCAAGCAGATTCGTATGGTCTTGTAGATAAACTCATTTTCGCAGCTTTGAACAAAA 563
Query 481 TCTCTCGGAATTCAGAAAC-A-TTttcttcttcttcgctctcttccttcgcctcctctct 538
|||||| |||||||| || | ||||||||||||||||| |||||||||||||| |||||
Sbjct 564 TCTCTCAGAATTCAG--ACGATTTTTCTTCTTCTTCGCTTTCTTCCTTCGCCTCTTCTCT 621
Query 539 ttctcctGAGATGGCCAAGAACACGCCGGAATCAGACAGTAGGTATATTTCACGGTCTGT 598
||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||
Sbjct 622 TTCTCCTGAGATGGCCAAGAACACGTCAGAATCAGACGGTAGGTATATTTCGCGGTCTGT 681
Query 599 TTCTTGCGGAAGAAGCAACGAGTGGTGGTTCGACGATATGACAACTCTTTCCTCG-AGTA 657
| ||||||||||||||||||||||||||||||| |||||||||| ||||||| || || |
Sbjct 682 TGCTTGCGGAAGAAGCAACGAGTGGTGGTTCGAAGATATGACAAATCTTTCCCCGAAG-A 740
Query 658 TTATTTTG-AGACTAATCATGATCATTGGAGCTTACAAGACAAACATAAAAAGCTTAGTC 716
| || ||| || ||| | |||||||||||||||||||| || ||||||||||||||||||
Sbjct 741 TCATATTGAAG-CTAGTTATGATCATTGGAGCTTACAAAACCAACATAAAAAGCTTAGTC 799
Query 717 CAAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAAGAACTACT 776
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CTAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAAGAACTACC 859
Query 777 ACAGAGCTTATGAGGAACAAGCTCGAGTACTCCA-ATTTAGCTGACACAGCGGCTAAAGG 835
|| |||||||||||||||||||||||||||| || |||||||||||||||||| || |||
Sbjct 860 ACTGAGCTTATGAGGAACAAGCTCGAGTACT-CAGATTTAGCTGACACAGCGGTTAGAGG 918
Query 836 AGTGATTTCTGCAGGGAAAACCG--CGTTTTCTTGCAGGAAACTCTTTTGGGTTCTTTGG 893
||||||||| |||||| | | || |||||||||||||||||||||| ||| ||||| |
Sbjct 919 AGTGATTTCCGCAGGG-ACA-CGTACGTTTTCTTGCAGGAAACTCTTCTGGATTCTTCGA 976
Query 894 GTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCGAGAATTGGTTTAGAAACCCTAATAGGA 953
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 977 GTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCAAGAATCGGTTTAGAAACCCTAATAGGA 1036
Query 954 GAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATACCTGCAGGAGGAAGCAAAGAG 1013
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1037 GAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATATCTGCAAGAGGAAGCAGAGAA 1096
Query 1014 AGCGGTTTCTACAATGTGGATCTTGTGATAAGATTACTAAAAGTGTTTGTgaagaac--a 1071
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1097 AGTGGTTTCTACAATGTTGATCTTGTGATAAGATTACTAAAAGTATTTGTGAAGAACAGA 1156
Query 1072 g-agaagaag-a-aa-tatcaagagagaagaacatgaaagaaATTGGGAAATTGATTGAT 1127
| |||||||| | || ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1157 GAAGAAGAAGAAGAAGAATCAAGAGAGAGGAATATGAAAGAAATTGGGAAATTGATTGAT 1216
Query 1128 AAGTATTTGAGAGAGATATCTCCAGATCAGAATTTGAAAGTCTCCAAGTTTCTTGGTGTT 1187
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1217 AAGTATTTGAGAGAAATATCTCCAGATCAGAATTTGAAAGTCCCCAAGTTTCTTGGTGTT 1276
Query 1188 GCAGAGAGTTTGCCAGATTCAGCTAGAGATTGCTTTGATGGAGTTTACAGAGGAATTGAC 1247
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1277 GCAGAGAGCTTGCCGGATTCAGCTAGAGATTGCTTTGATGGAGTTTACAGAGCAATTGAC 1336
Query 1248 ATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 ATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGT 1396
Query 1308 CTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATC 1456
Query 1368 CCTCCAGAAATCGCCATTGAAGCACTTAAGTCCAGATGTGACAATCAAGAACACACAACT 1427
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1457 CCTCCAGAAATCGCCATTGAAGCACTCAAGTCCAGATGTGGGAATCAAGAACACACAACT 1516
Query 1428 TCAGATGTTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 TCAGATGTTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAG 1576
Query 1488 CCTGT-GCTATTGCATCTTGAGATATCCGAGAAATTAGCCGAGAGGTTGAAGAGTAGAGG 1546
||||| | |||||||||| |||||| | ||||||||||||||||||||||||| || |||
Sbjct 1577 CCTGTAG-TATTGCATCTCGAGATAACAGAGAAATTAGCCGAGAGGTTGAAGACTAAAGG 1635
Query 1547 AGGATATAACTTGA-GTGTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGCTAAA 1605
||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1636 AGGATATAATTTGAAG-GTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGGTAAA 1694
Query 1606 GGTCCCA 1612
||||||
Sbjct 1695 CGTCCCA 1701
> AT3G19850.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:6898181-6901255 REVERSE LENGTH=1965
Length=1965
Score = 726 bits (393), Expect = 0.0
Identities = 1107/1431 (77%), Gaps = 131/1431 (9%)
Strand=Plus/Plus
Query 36 GATCTT-AAGATCAATCTCAATGGCCAATACACATTCTTCCTCAATCAGGACGTGATTTC 94
|||||| || |||||||||||| ||||| || |||||| |||||||||| |||| ||
Sbjct 114 GATCTTCAA-ATCAATCTCAATAACCAATTTACTTTCTTCGTCAATCAGGATTTGATCTC 172
Query 95 AAAGTACTCTGGAAGT-TTGAGGAAGATGATTAAACAGAGCAA-AAG--G-AAGAGAA-- 147
| ||||||| || | |||||||||||||| ||||||||||| ||| | || ||||
Sbjct 173 AGAGTACTCAGG-CTTCTTGAGGAAGATGATAAAACAGAGCAATAAGAAGAAAAAGAATC 231
Query 148 ACAAGAAAAAG-AGAATCATCACTATCGAGATTGATGATTTTCCTGGTGGACCAGATGGG 206
||||| || || |||||||| | |||||| |||| |||||||| ||||| ||||||||
Sbjct 232 ACAAG-AACAGTAGAATCAT--C-ATCGAGGTTGAAGATTTTCCAGGTGGGTCAGATGGG 287
Query 207 TTTGAGC-TGGTTTCAAGGTTCTGTTACAACAACGGAGAAATCTCAATCGATGTCTCAAA 265
|| || | |||||| ||| ||||||| | |||| |||||| || |||||||||||
Sbjct 288 TTCGA-CTTGGTTTTAAGATTCTGTT---ATGGTGGAGGAATCTCGATAGATGTCTCAAA 343
Query 266 TGTCTCGACTTTGTACTGCTGC-TCTGTTTTTCTAGCCATGTCGGAGAAGTTCTGTTTCT 324
||| || | |||| | |||| | ||||| || || | ||| | ||||| |||||| ||
Sbjct 344 TGTGTCCATTTTGCATTGCT-CTTCTGTCTTCCTTGAGATGACAGAGAAACTCTGTTCCT 402
Query 325 CTAATCTCTTCCTTCAG-ACCGAGAAGTTTCTAGAA-GAAGTGTTATA-TGGGTCTTGGA 381
| |||||||| |||| | || ||||||||||||||| ||| |||| || | |||| ||||
Sbjct 403 CGAATCTCTTGCTTC-GAACAGAGAAGTTTCTAGAAGGAA-TGTTCTACT-GGTCCTGGA 459
Query 382 GCGACATCGTTTTGTGTCTCAAGAACTGCGAGCAAGTGTTCTTCCAAGCAGATTCGTATG 441
||||||||| ||||||||||||| |||||||||||||||||| || || ||||| || |
Sbjct 460 ACGACATCGTATTGTGTCTCAAGAGCTGCGAGCAAGTGTTCTTACACGCTGATTCTTACG 519
Query 442 GTCTTGTAGATAAACTCATCTTCGCAGCTTTGA-CCAAAATCTCTCGGAATTCAGA---- 496
||||||| ||||| || | |||| | ||| | |||||||| ||| |||||||||
Sbjct 520 GTCTTGTTGATAAGCTTGTTTTCG-GGGTTTTAGCCAAAATCCCTCAGAATTCAGACGTG 578
Query 497 A-ACA----TTttc-t--tcttcttcg-c-t-ctct---tc--cttc-gcctcctctctt 539
| || ||||| | || ||| || | | |||| || | || ||||||||||
Sbjct 579 AGTCATGTCTTTTCATCATCCTCTCCGTCTTCCTCTGCCTCTGCCTCAGCCTCCTCTCAG 638
Query 540 tctcctGAGATGGCCAA-GAACACGCCGGAATCAGACAGTAGGTATATTTC-ACGGTCTG 597
|| || |||| || ||| || | | || | ||||||| |||| || ||| | |||||
Sbjct 639 TCGCCGGAGACGG-CAATGATTAGGTCGTATTCAGACAAAAGGTCTACTTCGA-GGTCTT 696
Query 598 TTTCTTGC-GGAAGAAGCAACGAGTGGTGGTTCGACGATATGACAACTCT-TTCCTCGAG 655
|||||||| || | ||| |||||||||||||||||||||||| ||| ||| | | |
Sbjct 697 TTTCTTGCAGG-ACAAGTAACGAGTGGTGGTTCGACGATATGTCAATTCTCGGGC-CAAA 754
Query 656 TATTATTTTG-AGA-CTAATCATGAT-CA-TT-G-GAGC-TTACAAGACAAACATAAAAA 708
|| | ||| | | || || | || || || | | || | | |||| | | || | |
Sbjct 755 AATCA--TTGAAAAGCTGAT-A-AATACACTTGGTGCGCATGATAAGA-ACA-AT-GACA 807
Query 709 GCTTAGTCCAAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAA 768
|||| |||| || | ||||||||||||||| ||||||||||| | | ||||| |||
Sbjct 808 GCTTGGTCCTCACAAAATTTCTTCTCCATTACCTCAAGACAAAGGT-C---CCAAA-CAA 862
Query 769 GAACTACTACAGAGCTTATGAGGAACAAGCTCGAGTACTCCA-ATTTAGCTGACACAGCG 827
| | || | | |||||||||||||| | || ||||||||| ||||||
Sbjct 863 G------T-CA-A-C-------CAACAAGCTCGAGTA-TTCAGGTTTAGCTGATACAGCG 905
Query 828 GCTAAAGGAGT-GATTTCTGCAGGGAAAACCGCGTTTTCTTGCAGGAAACTCTTTTGGGT 886
| | ||||||| | |||| |||| ||||||||||||||| ||||| ||| | || |||||
Sbjct 906 GTTCAAGGAGTGGTTTTC-GCAGCGAAAACCGCGTTTTCATGCAGAAAAATGTTCTGGGT 964
Query 887 TCTTTGGGTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCGAGAATTGGTTTAGAAACCCT 946
||| | |||||||| | |||||| |||||| ||| || |||||||||||||| | |
Sbjct 965 TCTGCGAGTTTTATCGGGATTTAGCATAAGTAAAGAATCAAGAATTGGTTTAGAGAGGGT 1024
Query 947 AATAGGAGAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATACCTGCAGGAGG--A 1004
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
Sbjct 1025 TATAGGAGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCAGCTGGAGGAAA 1084
Query 1005 AGCA-AAGAGAGCGGTTTCTACAATGTGGATCTT-GTGATAAGATTACTAAAAGTGTTTG 1062
|| | || | || || || ||| |||||||| || |||||||||||||| ||||||||||
Sbjct 1085 AGGAGAA-AAAG-GGGTT-TACGATGTGGAT-TTGGTGATAAGATTACTCAAAGTGTTTG 1140
Query 1063 T--gaa---g-aacagagaagaagaaatatcaagagagaaga-acatga-aagaaATTGG 1114
| ||| | |||| |||||||| | ||| ||| | || | |||| ||| ||||||
Sbjct 1141 TAAGAATTGGAAACACAGAAGAAG-GAGATC-AGA-ATTTGAGA-ATGAGAAG-AATTGG 1195
Query 1115 GAAATTGATTGATAAGTATTTGAGAGAGATATCTCCAGATCAGAAT-TTGAAAGTCTCCA 1173
||| ||||||||||||||| | ||||||||||||||||| |||||| || ||||| || |
Sbjct 1196 GAAGTTGATTGATAAGTATCTCAGAGAGATATCTCCAGACCAGAATCTT-AAAGTGTCAA 1254
Query 1174 AGTTTCTTGGTGTTGCAGAGAGTTTGCCAGATTCAGCTAGAGATTGCTTTGATGGAGTT- 1232
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1255 AGTTTCTTGAAGTTGCAGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGA-TTA 1313
Query 1233 TACAGAGGAATTGACATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACA 1292
||||||| ||| |||||||||| ||||||||||||| ||| || || | ||| |||||
Sbjct 1314 TACAGAGCCATTAACATCTATCTTGAGTCTCATCCGAAACTATCATCCGAGGATAGAACA 1373
Query 1293 GAGA-TATGTCGATGTCTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGC 1351
| | ||||||||||||| |||||||||||| | ||| |||| || |||||||| || ||
Sbjct 1374 AA-ACTATGTCGATGTCTAAACTACAAGAAATTGACATTGGACACATGCAAACAACTTGC 1432
Query 1352 CAGAAA-CCCTAAGATCCCTCCAGAA-ATCGCCA-TTGAAGCACTTAAGTC 1399
| ||| ||| |||||||||||| || || || | || ||||||| |||||
Sbjct 1433 AAAAAATCCC-AAGATCCCTCCA-AATATTGC-AGTTCAAGCACTCAAGTC 1480
> AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:18622026-18624250 FORWARD LENGTH=2225
Length=2225
Score = 579 bits (313), Expect = 4e-164
Identities = 345/360 (96%), Gaps = 4/360 (1%)
Strand=Plus/Minus
Query 1255 TACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGTCTCAACT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 TACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGTCTCAACT 2110
Query 1315 ACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATCCCTCCAG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 ACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATCCCTCCAG 2050
Query 1375 AAATCGCCATTGAAGCACTTAAGTCCAGATGTGACAATCAAGAACACACAACTTCAGATG 1434
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 2049 AAATCGCCATTGAAGCACTCAAGTCCAGATGTGGGAATCAAGAACACACAACTTCAGATG 1990
Query 1435 TTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAGCCTGT-G 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1989 TTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAGCCTGTAG 1930
Query 1494 CTATTGCATCTTGAGATATCCGAGAAATTAGCCGAGAGGTTGAAGAGTAGAGGAGGATAT 1553
|||||||||| |||||| | ||||||||||||||||||||||||| || ||||||||||
Sbjct 1929 -TATTGCATCTCGAGATAACAGAGAAATTAGCCGAGAGGTTGAAGACTAAAGGAGGATAT 1871
Query 1554 AACTTGA-GTGTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGCTAAAGGTCCCA 1612
|| |||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1870 AATTTGAAG-GTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGGTAAACGTCCCA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5