BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923473
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 | chr1:... 1520 0.0
> AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628555-18631946
REVERSE LENGTH=1488
Length=1488
Score = 1520 bits (823), Expect = 0.0
Identities = 886/916 (97%), Gaps = 5/916 (1%)
Strand=Plus/Plus
Query 47 TCCTACTAATGGATCAGTCTACGTTTCCAATCTCCCATTAGGAACTGACGAGAATATGTT 106
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 118 TCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTT 177
Query 107 GGCTGAGTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGCACTCCTAA 166
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 178 GGCTGACTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGTACTCCTAA 237
Query 167 GGTATGGCTGTACCGGGATAAAGAGACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 226
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GGTATGGCTGTACCGGGATAAAGAAACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 297
Query 227 TGAGGATCCCCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 286
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGAGGATCCGCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 357
Query 287 AAACACCATTGGAGTTTTTATGGCTGAGTCG-AGACATAAAAATGCTGGTGATGCAGTTG 345
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 358 AAACACCATTGGAGTTTTTATGGCCGAGTCGAAGA-ATAAAAATGCTGGTGATGCAGTTG 416
Query 346 AGTTTGTTGAATTCGATGGAGGTGCTCAGGAAACAAATGAAGGTGCTGGAAGGGGTAGAG 405
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
Sbjct 417 AGTTTGTTGAATTCGATGGAGGTGCTGAGGAAACAAATGGAGGTGCTGGAAGGGGGAGGG 476
Query 406 GTCAGGCTGATCCGTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCAAATA 465
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 GTCAGGCTGATTCTTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCTAATA 536
Query 466 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 596
Query 526 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGTGGTCGTGGAAGGGGTCGAGGTG 585
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGT---CGTGGAAGGGGTCGAGGTG 653
Query 586 GAGGCGCTGATGGTGGGGCACCTGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 645
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 654 GAGGCGCTGATGGTGGGGCCCCGGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 713
Query 646 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCTAAGCGTTTAAAAT 705
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 714 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCGAAACGTCTAAAAT 773
Query 706 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGTCGTG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGCCGTG 833
Query 766 GTGGTGGTTACAAGGAATTGGATGAACAAGAATTAGAGGAAACAAAGAGACGCAGGCGTG 825
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 GTGGTGGTTACAAGGAATTAGATGAACAAGAATTAGAGGAAACGAAGAGACGCAGGCGTG 893
Query 826 AGGCTGAAGAAGATGATGGCGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 885
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGGCTGAAGAAGATGATGGTGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 953
Query 886 GTGTTAAAACAAGCCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 945
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTGTTAAAACAAACCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 1013
Query 946 AAGTAGAGGAACTAGG 961
|||| |||||||||||
Sbjct 1014 AAGTCGAGGAACTAGG 1029
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTTGATGAAATTGGATTACGATGGCTGGATAT 32
||||||||||||||||||||||||||||||||
Sbjct 87 TTTGATGAAATTGGATTACGATGGCTGGATAT 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5