BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923475
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50320.1 | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18... 963 0.0
> AT1G50320.1 | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18638384-18639536
REVERSE LENGTH=843
Length=843
Score = 963 bits (521), Expect = 0.0
Identities = 570/594 (96%), Gaps = 2/594 (0%)
Strand=Plus/Plus
Query 1 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGCTCAACGATTCTTATTCGAT 60
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 53 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGTTCGACGATTCTTATGCGAT 112
Query 61 CATATCTCACTCCTCCGGTCCGTTCATGTTCTTCGGCAACCTCCGTTTCCGTCAAATCTG 120
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 113 CATATCTCACTCCTCCGGTTCGTTCATGTTCTCCGGCAACCTCCGTTTCCGTCAAACCTC 172
Query 121 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCCTTAAGCTCCG 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 173 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCGTTAAGCTCCG 232
Query 181 GTGGTAGAGGAAGCAAG-AAATTCTCTAGTTCGGCGATAAGATGCGGCGGAATCAAAGAG 239
||| |||| ||| | || ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 233 GTGCTAGAAGAA-CCAGAAAAAGCTCTAGTTCGGTGATAAGATGCGGCGGAATCAAAGAG 291
Query 240 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGACCGGCCGGTTTTGGTTGAA 299
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 292 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGCCCAGCCGGTTTTGGTTGAA 351
Query 300 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT 411
Query 360 CAGGAATATGGTGACAAATTGACGATTGTAAAGATTGATCATGACGCTAACCCAAAGTTA 419
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 412 CAGGAATATGGTGACAAATTGACGATTGTAAAGATTGATCACGACGCTAATCCAAAGTTA 471
Query 420 ATAGCGGATTTCAAGGTTTATGGTTTACCGCATTTCATTCTCTTCAAGGACGGGAAGGAA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATAGCGGAGTTCAAGGTTTATGGTTTACCGCATTTCATTCTCTTCAAGGACGGGAAGGAA 531
Query 480 GTTCCAGGGAGTAGAAGGGAAGGTGCTATTACAAAGGCCAAGCTTAAGGAGTACATTGAC 539
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTCCAGGGAGCAGAAGGGAAGGTGCTATTACAAAGGCCAAGCTTAAGGAGTACATTGAT 591
Query 540 GGTCTCTTGAACTCAATATCTGTTGCTTAATCGTCTCTCTTCCCACCGGTATTC 593
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 592 GGTCTCTTGAACTCAATATCTGTTGCTTAATCGTCTCTCTCCCCACCGGTATTC 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5