BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923476

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50325.1 | Symbols:  | Plant invertase/pectin methylesterase...   346    9e-95


> AT1G50325.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:18639874-18640488 REVERSE 
LENGTH=615
Length=615

 Score =  346 bits (187),  Expect = 9e-95
 Identities = 312/369 (85%), Gaps = 22/369 (6%)
 Strand=Plus/Plus

Query  1    TTCAAAA-AGCCTTAGATCTGATGAAGCATTTCCAGTCACTCACAAACAGCACAACCGAT  59
            ||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  242  TTCAAAACA-CCTTTGATCTAATAAAGCATTTCCAGTCACTCACAAACAGCACAACCGAT  300

Query  60   CGCAGTTCTAAGGATTCCTATAAGCTATGTTCAGAACTTTTTAGCCTTGGTATCCATTCG  119
            | ||||||||||| ||| ||| ||||||||| | | |||||||  |||   ||| || | 
Sbjct  301  CCCAGTTCTAAGGGTTCTTATGAGCTATGTTTACATCTTTTTAATCTT---ATCAATCCT  357

Query  120  CTTGAAATCGCTTTTAAAGCTTTGGCAACCAATGACTATGACACCTTAAACAGGACCGTT  179
            ||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||  |||
Sbjct  358  CTTGAAACCGCACTTAAAGCTTTGGCAACCAATGACTATGACACTTTAAACAGGAATGTT  417

Query  180  GGTAATATGTCTGCCTATGCG-GA-GGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGC  237
            | |  ||||||| |  || || || |||||||| ||||||||||||||||||||||||||
Sbjct  418  GATGCTATGTCT-CA-ATTCGCGATGGAATGTGAAAGCGAGCTGTCAAGTGTCATCAAGC  475

Query  238  CTATTCCACAGCTCTT-AAAAGGGGTTTCTATTGTCGAAAATGTAGGTC--ACATTGTTC  294
            |||||||| ||||||| ||||||| ||||||| ||||||||||||  ||  ||||| || 
Sbjct  476  CTATTCCAAAGCTCTTGAAAAGGG-TTTCTATCGTCGAAAATGTA--TCCGACATTATTT  532

Query  295  TTGTAATTTTGGAATGTTTTCTA-GTAAAAGAAAAAACTTTC-TGTTAAG-AATCAGTAC  351
            |||||||| ||||||||||| || | ||||||| |||||| | ||| ||| |||||||| 
Sbjct  533  TTGTAATTGTGGAATGTTTTTTAAG-AAAAGAAGAAACTT-CATGT-AAGGAATCAGTAT  589

Query  352  CCAAATCTA  360
            | |||||||
Sbjct  590  C-AAATCTA  597



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5