BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923494
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50490.1 | Symbols: UBC20 | ubiquitin-conjugating enzyme 20 ... 1011 0.0
AT3G20060.1 | Symbols: UBC19 | ubiquitin-conjugating enzyme19 |... 579 1e-164
> AT1G50490.1 | Symbols: UBC20 | ubiquitin-conjugating enzyme 20
| chr1:18704805-18706478 REVERSE LENGTH=918
Length=918
Score = 1011 bits (547), Expect = 0.0
Identities = 571/583 (98%), Gaps = 0/583 (0%)
Strand=Plus/Plus
Query 3 CGATTAAGAAAGCGAAAGTGATGGCCGCCGTAAATGGGTATCAGGGAAATACTCCGGCAG 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 156 CGATTAAGAAAGCGAAAGTGATGGCCGCCGTAAATGGATATCAGGGAAATACTCCGGCAG 215
Query 63 ATCCTCCGGCGTCTAATGGATCTAAACAACCTGCCGCTCCGACCAAGACTGTTGACAGCC 122
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 216 ATCCTCCGGCGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAGCC 275
Query 123 AATCTGTTCTCAAAAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAG 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 AATCTGTTCTCAAAAGACTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAG 335
Query 183 GAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAA 395
Query 243 GCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGATT 302
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 396 GCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTCTCCAATGACT 455
Query 303 ATCCTTTCAAACCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATG 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ATCCTTTCAAGCCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATG 515
Query 363 TCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGTCA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 516 TCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTACGATGTGA 575
Query 423 GGACAATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGA 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GGACGATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGA 635
Query 483 ACACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 ACACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGC 695
Query 543 TCTACAAGCCTCCCAGTGCATGATTTCTGCAAGCTGTTCTGAT 585
| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 696 TTTACAAGCCTCCAAGTGCATGATTTCTGCAAGCTGTTCTGAT 738
> AT3G20060.1 | Symbols: UBC19 | ubiquitin-conjugating enzyme19
| chr3:7002817-7004450 REVERSE LENGTH=823
Length=823
Score = 579 bits (313), Expect = 1e-164
Identities = 472/547 (86%), Gaps = 18/547 (3%)
Strand=Plus/Plus
Query 17 AAAGTGATGGCCG-CCGTAAATGGGTA-TCAGGGAAATACTCCGGC--AGA-TCCTCCGG 71
|||| ||||| || | || |||||||| ||||| ||||||||||| || | | ||||
Sbjct 163 AAAG-GATGG-CGACGGTTAATGGGTACACAGGG-AATACTCCGGCGGCGACTACACCGG 219
Query 72 C-GTCTAATGGATCTAAA-CAACCTGC-CGCTCCGACCAAGACTGTTGACAGCCAATCTG 128
| | | | ||||| ||| ||| |||| | ||||||| ||||| || || ||||| || |
Sbjct 220 CAG-CCACCGGATC-AAAGCAATCTGCTC-CTCCGACTAAGACCGTCGATAGCCACTCCG 276
Query 129 TTCTCAAAAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAGGAATAT 188
|||| |||||||||||||||||| | ||||| ||||||||||| | || ||| || ||||
Sbjct 277 TTCTAAAAAGGCTGCAATCTGAACTAATGGGATTGATGATGGGAGCTGATCCGGGGATAT 336
Query 189 CGGC-TTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAAGCAAA 247
| || ||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 337 CTGCGTTT-CCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATTACAGGAAGCAAA 395
Query 248 GATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGATTATCCT 307
||||||||||| ||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 396 GATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCTAACGATTATCCT 455
Query 308 TTCAAACCT-CCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATGTCTA 366
|| || || ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 456 TTTAAGTCTCCCAAA-GTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 514
Query 367 TGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGTCAGGAC 426
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 515 TGGCAATATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTGAGGAC 574
Query 427 AATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGAACAC 486
||| |||| || ||||| ||||| || ||||||||||||||||| |||||||||||||
Sbjct 575 GATATTACTCTCAATTCAAAGCCTTCTCGGAGAACCGAACATCAGCTCACCATTGAACAA 634
Query 487 TCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 546
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 635 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 694
Query 547 CAAGCCT 553
|||||||
Sbjct 695 CAAGCCT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5