BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923497
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50510.1 | Symbols: | indigoidine synthase A family protein... 1637 0.0
> AT1G50510.1 | Symbols: | indigoidine synthase A family protein
| chr1:18716112-18719328 FORWARD LENGTH=1379
Length=1379
Score = 1637 bits (886), Expect = 0.0
Identities = 977/1021 (96%), Gaps = 5/1021 (0%)
Strand=Plus/Plus
Query 14 GGGAGAAATGGCTTCTTCTTCT-GCTCATTCTAGAATCTCGAATCTCCAGAATCATCTTT 72
||||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 113 GGGAG-AATGGCTTCTTCTT-TAGCTCAATCTAGAATCTCGAATCTCCAGAATCATCTTT 170
Query 73 CACCTCTTGAAGCAAACAACAAGCTCAGGAGTCTGGTCAAGATTTCTCCACAAGTATCTG 132
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 171 CACCTCTTGAAGCAAACAACAAGCTCAGGAGTCTGGTCAAGATTTCTCCCCAAGTATCTG 230
Query 133 AAGCCTTATCCAATGGACGCGCTGTGGTGGCTCTTGAGTCAACCATTATCTCCCATGGGA 192
||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 231 AAGCCTTGTCTAATGGACGTGCTGTTGTCGCTCTTGAGTCAACCATTATCTCCCATGGGA 290
Query 193 TGCCTTACCCTCAAAATCTGCAAACAGCAAAAGAGGTGGAGTCAATTGTTAGAGAAAATG 252
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 291 TGCCTTACCCTCAAAATCTGCAAACAGCAAAAGAGGTGGAGTCAATTGTGAGAGAAAATG 350
Query 253 GAGCTGTCCCTGCGACAATAGCCATCCTGAATGGAGTACCTTGCATAGGTCTGAGCGAGG 312
|||| ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 351 GAGCAATCCCTGCAACAATTGCTATCCTTAATGGAGTACCTTGCATAGGTCTGAGCGAGG 410
Query 313 AAGAACTAGAACGTCTTGCATCTCTGGGGAAAAGTGTTCAAAAGACAGCAGGCAGGGACA 372
||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||
Sbjct 411 AAGAACTAGAACGTCTTGCATCTCTCGGAAAAAGTGTCCAAAAGACAGCGGGAAGGGACA 470
Query 373 TAGCACATGTTGTGGCTACAAGAGGAAACGGTGCAACTACAGTCTCTGCAACGTTGTTTT 432
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TAGCAAATGTTGTGGCTACAAGAGGAAACGGTGCAACTACAGTCTCTGCAACGTTGTTTT 530
Query 433 TCGCTTCAATGGTTGGCATCCAAGTTTTTGTGACGGGTGGGATAGGAGGTGTCCATAGAC 492
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 531 TCGCTTCAATGGTTGGCATCCAAGTTTTTGTGACGGGCGGGATAGGTGGTGTCCATAGAC 590
Query 493 ATGCCAACCATACGATGGACATATCATCTGATCTTACTGCACTTGGAAGGACTCCCATAG 552
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 591 ATGCCAACCATTCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAG 650
Query 553 CAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGAATATTTGG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGAATATTTGG 710
Query 613 AAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAG 770
Query 673 AGAAAAGCGGCTGTAAGGCACCTTCCCGTGTAAATAGCCCTGAAGACTGTGCTAGAGTAA 732
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AAAAAAGTGGCTGTAAGGCACCTTCCCGTGTAAATAGCCCTGAAGACTGTGCTAGAGTAA 830
Query 733 TAGATGCAAACATGAAGCTAAACCGTCAGGCTGGGATTTTATTTGCTGTTCCAATTCCGA 792
||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 831 TAGATGCAAACATGAAGCTAAACCGTCAGGCGGGGATTCTATTTGCCATTCCAATTCCGA 890
Query 793 AACAGCATTCAGCTGCCGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAG 852
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AACACCATTCAGCCGCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAG 950
Query 853 CAAGGGaaaaaaaCGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATG 912
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CAAGGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATG 1010
Query 913 AGTTAACTGGAGGCACGTCACTTGCTGCAAACATTGCGCTTGTGAAAAACAATGCCCTTA 972
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1011 AGTTAACCGGAGGCACATCACTTGCAGCAAACATTGCGCTTGTGAAAAACAATGCCCTTA 1070
Query 973 TCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGATGTGAGCTTCACT-ATCAATCTCA 1031
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1071 TCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGATGTGAGCTTC-CTTATCAATCCCA 1129
Query 1032 G 1032
|
Sbjct 1130 G 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5