BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923499

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50570.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB...   449    6e-126


> AT1G50570.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB 
domain) family protein | chr1:18726235-18728289 REVERSE LENGTH=1521
Length=1521

 Score =  449 bits (243),  Expect = 6e-126
 Identities = 291/314 (93%), Gaps = 4/314 (1%)
 Strand=Plus/Plus

Query  34    AAGAAGCGAAGAAGCCAACAGGTATCATCAAGAATGGTGATTTAGATAAGGCGGATGATG  93
             ||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||||| |
Sbjct  1061  AAGAAGCGAAGAAGCCAACAGATATCATCAAGAGTGGTGATTTAGATAAGACTGATGAAG  1120

Query  94    AAGCAGTAGTGAAACCGGTTCTGTCAGTGAGCATTGAACCAGAGCAAAAGGAAGTGCAGC  153
             ||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||| |
Sbjct  1121  AAGCAGTTGTGAAACCGGTTCTGACAGTGAACATTGAACCAGAGCAAAAGGTAGTGCAAC  1180

Query  154   AAGATATTGTTGACATGTACACGAAAAGCTTGCAGCAATAT-ACTGAATCACTGTTTAAG  212
             |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||  ||||
Sbjct  1181  AAGATATTGTTGACATGTACACAAAAAGCTTGCAGCAAT-TCACTGAGTCACTGGCTAAG  1239

Query  213   ATGAAAC-TCGCTTTGGACATCGATAGCCCGACCCCATCAGAGAACTCAAGCTCCTCCCA  271
             ||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct  1240  ATGAAACTTC-CTTTGGACATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCA  1298

Query  272   GCAGACGCCAAAGAGTGCTAGCTCCCGTGTGTTCTACGGTAGTAGAGCCTTCTTCTGAAG  331
             |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  1299  GCAGACGCCAAAGAGTGCTAGCTCCCGTGTTTTCTACGGGAGTAGAGCCTTCTTCTGAAG  1358

Query  332   CTCGGAAATCATCT  345
             ||| ||||||||||
Sbjct  1359  CTCAGAAATCATCT  1372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5