BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923513

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5...   110    1e-23


> AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5578431-5580693 
FORWARD LENGTH=1399
Length=1399

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 63/65 (97%), Gaps = 0/65 (0%)
 Strand=Plus/Minus

Query  209  AGTTGCCTTCCTGACTCTAGCAAAACTTGCAGTCCAAGAGTTGCTATCACGGAAACAAAC  268
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  708  AGTTGCCTTCCTGACTCTAGCAAAACTTGCAGTCCAAGAGTTGCCATCACGGAAGCAAAC  649

Query  269  ACAAT  273
            |||||
Sbjct  648  ACAAT  644



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5