BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923514

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5...   353    4e-97


> AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5578431-5580693 
FORWARD LENGTH=1399
Length=1399

 Score =  353 bits (191),  Expect = 4e-97
 Identities = 262/295 (89%), Gaps = 10/295 (3%)
 Strand=Plus/Plus

Query  1    CTCCTCGAAGGTTTCGATGAGATGGAGACTATCCATGAAACTGGTTTGGCATCTGGTGTT  60
            |||||||| |||||| ||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct  323  CTCCTCGAGGGTTTCAATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTT  382

Query  61   CCAACTGAGAAAGAAATGAACAAGCTTGCAATGAGTGAGAGA-TTGGCAGTTCACATACT  119
            ||||||||| |||||||||| |||||||||| |||||||||| || || ||||||||| |
Sbjct  383  CCAACTGAGGAAGAAATGAAGAAGCTTGCAAAGAGTGAGAGACTT-GCGGTTCACATA-T  440

Query  120  -AAACACAACAAATTTGGTGCTTTTTGT-GTCAAAAGTTTATGCCTCTATGGAGAGTAGA  177
              ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  441  CGAACGCAACAAATTTGGTGCTTTTTGTAG-CAAAAGTTTATGCCTCTATGGAGAGTAGA  499

Query  178  TCCATGGTTGTGATTGCTTCAACTTTAGG-CTCTCTCTTAGATCACTTGTCTGGTTTTAT  236
            ||||||| |||||||||||||||||| || |||||| || |||| |||||||||||||||
Sbjct  500  TCCATGGCTGTGATTGCTTCAACTTT-GGACTCTCTTTTGGATCTCTTGTCTGGTTTTAT  558

Query  237  TCTTTGGTTTACGGCTAATACCATGAGATA-CTAATC-AGTTTCACTATCCAATC  289
             || |||||||| |||||| |||||||| | | || | ||||||||||||| |||
Sbjct  559  CCTCTGGTTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTCACTATCCTATC  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13371221234


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5