BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923516
Length=2230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50660.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 3627 0.0
AT3G20350.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1122 0.0
AT1G50659.1 | Symbols: | | chr1:18770937-18771930 REVERSE LEN... 717 0.0
> AT1G50660.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1);
Has 21445 Blast hits to 15134 proteins in
1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052;
Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes
- 4809 (source: NCBI BLink). | chr1:18770937-18774686 FORWARD
LENGTH=2928
Length=2928
Score = 3627 bits (1964), Expect = 0.0
Identities = 2143/2229 (96%), Gaps = 14/2229 (1%)
Strand=Plus/Plus
Query 3 TATGGCGGTGATTAAGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TATGGCGGTGATTACGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 491
Query 63 GCTTTTGAGTCGGAAAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 122
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GCCTTTGAGTCGGATAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 551
Query 123 GCTACTACAGTCACTAAACGTCGAGCAAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 182
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 552 GCTACTACTGTCACTAAACGTCGAGCTAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 611
Query 183 GTTGCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCGCTATTGAAATGGAAGGTGGAG 242
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 612 GGTCCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCTTTATTGAAATGGAAGGTGGAG 671
Query 243 GATCGGAATAAAGAGAGAAGCGGCGTTGTCGAAGACGATGATTACGAGGATGATGGATGT 302
||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
Sbjct 672 GATCGGAATAAAGAGAGAAGCGGCGTTGTAGAAGACGATGATTAC------GA-GGA--T 722
Query 303 AGTAATAATAACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 362
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 -G--ATAATCACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 779
Query 363 TCACGGCCTGTCTCTGTTAGGAAACTCGCCGCCGGGCTATGGCGGTTGCAAGTTCCTGAC 422
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GCACGGCCTGTCTCTGTTAGGAAACTCGCCGCTGGGCTATGGCGGTTGCAAGTTCCTGAC 839
Query 423 GCGAGTTCTAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGATGTGCT 482
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 840 GCGAGTTCCAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGAAATGGT 899
Query 483 GGATACATGGGTGTTCCGTATCTTTATCATCATAGTGACAAACCTTCTGGCGGTCAAAGC 542
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 900 GGATACATGGGTGTTCCGTATCTTTATCACCATAGTGACAAACCCTCTGGTGGTCAGAGC 959
Query 543 AATAAGATAAGGCAGAACCCTAGCACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 602
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AATAAGATAAGGCAGAACCCTAGTACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 1019
Query 603 CTCGAGCCTTCAATGCCATTTCCCCACTCGGCCATGGAGGGGGCAACAAAATGGGATCCT 662
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1020 CTCGAACCTTCAATGCCATTTCCCCACTCAGCAATGGAGGGGGCGACAAAATGGGATCCT 1079
Query 663 GTCTGCTTGGATACAATGGATGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 722
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTCTGCTTGGATACAATGGAGGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 1139
Query 723 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 1199
Query 783 GCTCGCATTGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAACTCGAGCAGTTT 842
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GCTCGCATAGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAGCTCGAGCAGTTC 1259
Query 843 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCACGAGAAGGTCCGA 902
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCATGAGAAGGTCCGA 1319
Query 903 GCAATCATTGATGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 962
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCAATTATTGACGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 1379
Query 963 GAAATCGTGAATCATAAATTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1022
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GAAATCGTAAATCATAAACTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1439
Query 1023 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1499
Query 1083 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1559
Query 1143 ATGAGCCTCAGAGAAGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTCTGG 1202
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1560 ATGAGCCTCAGAGAAGAAGTGGACGATGAAAGAAGAATGCTACAGATGGCTGAGGTCTGG 1619
Query 1203 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTTGAGGAAAGGTAC 1262
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1620 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTCGAGGAAAGGTAC 1679
Query 1263 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCAAGAGATATTGTG 1322
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1680 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCACGAGATATCGTG 1739
Query 1323 ACAGATGTCAAAGAGGTTAGAGAGGCTGAGTTATTAAGAGAAACCGCGGCATTGGTTAAT 1382
||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1740 ACAGATGTCAAAGAGGTGAGAGAAGCTGAGTTATTAAGAGAAACCGCAGCATCAGTTAAT 1799
Query 1383 ATCCAAGAAATCAAGGAATTTACATATGAGCCTTCAAACCCGGATGATATCTACGCGGTG 1442
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1800 ATCCAAGAAATCAAGGAATTTACGTATGTGCCTGCAAACCCGGATGATATCTACGCGGTG 1859
Query 1443 TTTGAAGAAATGAATATCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTTGCTTAC 1502
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1860 TTTGAAGAAATGAATCTCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTCGCTTAC 1919
Query 1503 AGTCCAACCAGCCATGGTTCTAAAGTTCACACGGTAAGTCCAGATGCCAATTTGATGAAC 1562
||||||| |||||| | ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1920 AGTCCAATCAGCCACGATTCTAAAGTTCACACGGTAAGTCTAGATGCCAATATGATGAAC 1979
Query 1563 AAGAAAGGGAGACACTCAGATGCTTTTACTCACCAGAATGGAGACATAGAAGAAGATGAT 1622
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1980 AAGAAAGGGAGACACTCAGATGCTTATACTCACCAGAATGGAGACATTGAAGAAGATGAT 2039
Query 1623 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 2099
Query 1683 AGCATTCCTTCTGTGAACAACAAAAATCACCATCACCGAGACAGCAACGCCTCGAGTGGT 1742
||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||
Sbjct 2100 AGCATTCCTTCTGTGAACAACAAGAATCACAATCACCGACACAGCAACGCCTCCAGTGGT 2159
Query 1743 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGAGACAATGACTCCAACCACAGAGATAAGC 1802
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2160 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGATACAATGACTCCAACCACAGAGATAAGT 2219
Query 1803 GAAGTGTGTTCCATTCCAAGGCGGTCATCCAAAAAAGTTTCATCGATAGCAAAGCTTTGG 1862
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 2220 GAAGTGTGTTCCATTCCAAGACGGTCATCCAAAAAGGTTTCATCAATAGCAAAGCTTTGG 2279
Query 1863 AGATCATCAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 1922
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AGATCAACAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 2339
Query 1923 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAATCAAGCGCGGGAATGGTTTCACCA 1982
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2340 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAGTCAAGCGCGGGAATGGTTTCACCA 2399
Query 1983 GACAGAGTCTCGAGCAAAGGCGGATTCAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2042
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2400 GACAGAGTCTCGAGCAAAGGCGGATTTAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2459
Query 2043 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2519
Query 2103 GAATGGCCTAGAGGTGCACAGAAGAATAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2162
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2520 GAATGGCCTAGAGGTGCACAGAAGAGTAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2579
Query 2163 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAAGATTTAGGAGCCGAAACGG 2222
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 2580 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAGGATTTAGGAGCC-AAACCG 2638
Query 2223 TTTT-GGTC 2230
|||| ||||
Sbjct 2639 TTTTTGGTC 2647
> AT3G20350.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: plasma membrane; EXPRESSED
IN: cotyledon; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G50660.1); Has 15095 Blast hits to
11224 proteins in 1051 species: Archae - 223; Bacteria - 1586;
Metazoa - 7000; Fungi - 1255; Plants - 746; Viruses - 40;
Other Eukaryotes - 4245 (source: NCBI BLink). | chr3:7096348-7099767
FORWARD LENGTH=2671
Length=2671
Score = 1122 bits (607), Expect = 0.0
Identities = 1270/1573 (81%), Gaps = 113/1573 (7%)
Strand=Plus/Plus
Query 156 CCGAGTTTGACTCGTCAGCGAAGATCCGTTGC-T-TCTGGT--GGCAGACGAAGCCGGCC 211
||||| || |||||||| ||||||| | | || | ||| || || || | |||| ||||
Sbjct 345 CCGAGCTTCACTCGTCAACGAAGAT-C-TGGCGTGTCT-GTCAGG-AGGCTAAGCAGGCC 400
Query 212 GGAGACTCCGCTATTGAAATGGAAGGTGGAGGATCGGAATAAAGAGAGAAGCGGCGTTGT 271
||||||||| | |||||||| |||||||||||||| || | ||| || |||||| ||
Sbjct 401 GGAGACTCCTCAATTGAAATCGAAGGTGGAGGATCAAAACATTGAGCGATGCGGCGGGGT 460
Query 272 CGAAGACGATGATTACGAGGATGATGGATGTAGTAATAATAACCAGGTTGCGAGGTCAGA 331
||||| | |||| ||||||||||| ||| | | |||| | | | |||| |||||
Sbjct 461 TGAAGATGGTGATAACGAGGATGAT-GAT-T-G---TAAT-A--A-GATGCGTTGTCAG- 509
Query 332 GACTACTCGCCGCAAGGATCGGAGGAAAATCTCACGGCCTGTCT-CTGTTAGGAAACTCG 390
|| | || | | | | ||| | | | |||||||| | ||||||||||||| |
Sbjct 510 GA--A--CG--G--A-G-T---AGG--AGTGT-ACGGCCTG-ATACTGTTAGGAAACTTG 552
Query 391 CCGCCGG-GCTATGGCGGTTGCAAGTTCCTGACGCGAG-TTCTAGCGGCGGAGA-AAGAA 447
| ||||| | | ||||| |||| ||| || || ||| | ||||||||||||||| |||
Sbjct 553 CTGCCGGAG-TGTGGCGATTGCGAGTCCCGGATGCG-GTTTCTAGCGGCGGAGATAAG-- 608
Query 448 AGG-GCAAAGAGGGGTTAGGGTTTCAGG-----GAT-G---TGCTGGATACATGGGTGTT 497
||| |||| || ||||| ||||||||| | | | ||||||| || ||||| |
Sbjct 609 AGGAGCAAGGATCGGTTACGGTTTCAGGAAACTGCTGGTCCTGCTGGAAACTTGGGTCCT 668
Query 498 CCGTATCT-TTATCATCA-TA-G-TGACAAACCTTCTGGCGGTCAAAGCAATAAGAT-AA 552
| || | | |||||| || | | |||||||| ||||||| ||||||||| || | ||
Sbjct 669 CTGT-TTTATTATCACCACCATGATGACAAACATTCTGGCTTTCAAAGCAACAA-TTCAA 726
Query 553 GGCAGAACCCTAGCACTATTGCTACGACAAAAAATGGATTCTTGTGTAAGC-TCGAGCCT 611
| | || | |||| || | | | ||||||||||||||| | ||||||
Sbjct 727 -G-A-AA--CAAGCA-TA--G-T----------A--GATTCTTGTGTAAGCAT-GAGCCT 764
Query 612 TCAATGCCATTTCCCCACTCG-GCCATGGAGGGGGCAACAAAATGGGATCCTGTCTGCTT 670
||| | ||||||||||||| | || |||||||| ||||||||||||||||| |||||||
Sbjct 765 TCAGTTCCATTTCCCCACT-GCGCGATGGAGGGAGCAACAAAATGGGATCCCATCTGCTT 823
Query 671 GGATACAATGGATGAAGTACACCAAATATATAGCAACATGAAGCGTATTGATCAGCAAGT 730
|||||||| |||||| ||||||||||| |||| |||| ||||| | | | |||| |||||
Sbjct 824 GGATACAAGGGATGATGTACACCAAATCTATACCAACGTGAAGTGGAATAATCAACAAGT 883
Query 731 GAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAG-AACTGGAGGAAGCACATGCTCGCA 789
||||| ||| ||||| | |||||| ||||| | |||| ||||||| | |||| |||
Sbjct 884 GAATGATGTTTCATTAGCTTCTTCTATTGAA-TTGAAACTTCAGGAAGCTCGTGCTTGCA 942
Query 790 TTGAA-GATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAACTCGAGCAGTTTTTGAGG 848
|| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||| |
Sbjct 943 TT-AAGGATCTTGAGAGTGAGAAGCGATCTCAGAAAAAGAAGCTTGAGCAGTTCCTGAAG 1001
Query 849 AAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCACGAGAAGGTCCGAGCAATC 908
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1002 AAAGTTAGCGAGGAGAGGGCAGCTTGGCGGAGCAGAGAGCATGAGAAGGTCCGAGCAATT 1061
Query 909 ATTGATGATATGAAAACTGATATGAA-CAGGGAGAAGAAAACCCGTCAGAGATTAGAAAT 967
|||||||| |||||| |||| ||||| || ||| ||||| || |||||||||||||||||
Sbjct 1062 ATTGATGACATGAAAGCTGACATGAACCA-GGAAAAGAAGACTCGTCAGAGATTAGAAAT 1120
Query 968 CGTGAA-TCATAAATTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGTTACA 1026
||| || ||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1121 CGTCAATTCA-AAATTAGTCAATGAGCTTGCAGATTCAAAGTTAGCAGTAAAGCGTTACA 1179
Query 1027 TGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGACGAAC 1086
|||| || ||| || |||||||||| |||||||||||||| || |||||||| || ||||
Sbjct 1180 TGCATGATTACCAACAGGAAAGGAAGGCAAGAGAATTGATCGAAGAAGTTTGTGATGAAC 1239
Query 1087 TTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCCATGA 1146
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1240 TGGCAAAGGAAATAGAAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGCGAATCCATGA 1299
Query 1147 GCCTCAGAGAAGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTCTGGCGTG 1206
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1300 ATCTCAGAGAGGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTTTGGCGTG 1359
Query 1207 AGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTTGAGGAAAGGTACTCAC 1266
|||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||
Sbjct 1360 AGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAACACTCGAGGAAAAGTATTCAC 1419
Query 1267 AAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCAAGAGATATTGTGACAG 1326
|||||||||| || ||||||||| ||||| | ||||| || |||||| ||| | ||||
Sbjct 1420 AAATGAACAAACTCGTAGGAGATATGGAAGCCTTCCTCAGTTCAAGAAATACT---ACAG 1476
Query 1327 ATGTCAAAGAGGTTAGAGAGGCTGAGTTATTAAGAGAAACCGCGGCATTGGTT-A-A-TA 1383
||| |||||||| |||| || || || ||||||||||| || |||| ||| | | ||
Sbjct 1477 GTGTGAAAGAGGTGAGAGTTGCGGAATTGTTAAGAGAAACTGCTGCATCAGTTGATAATA 1536
Query 1384 TCCAAGAAATCAAGGAATTTACATATGAGCCTTCAAACCCGGATGATATC-TACGCGGTG 1442
|||||||||||||||||||||| ||||| || |||| ||||| |||||| | | | ||
Sbjct 1537 TCCAAGAAATCAAGGAATTTACGTATGAACCCGCAAAGCCGGACGATATCCT-CATGTTG 1595
Query 1443 TTTGAAGAAATGAATATCGGTGAAGCCCATGATAGAGAAATG-GAGAAATCTGTTGCTTA 1501
|||||| ||||||| || |||||| ||| |||||||||| | ||| ||| |||||| ||
Sbjct 1596 TTTGAACAAATGAACATGGGTGAAAACCAGGATAGAGAAA-GCGAGCAATATGTTGCCTA 1654
Query 1502 CAGTCCAACCAGCCATGGTTCTAAAGTTCACACGGTAAGTCCAGATGCCAATTTGATGAA 1561
|||||| |||||| | ||| |||| |||||||||||||||||||| ||||||||| ||
Sbjct 1655 CAGTCCGGTCAGCCACGCTTCAAAAGCTCACACGGTAAGTCCAGATGTCAATTTGATTAA 1714
Query 1562 CAAGAAAGGGAGACACTCAGA-TGCTTTTACTCACCAGAATGGAGACATA-GAAGAAGAT 1619
||| | ||||||||||| || |||||| ||| | |||||||| || || |||||||||
Sbjct 1715 CAA-A--GGGAGACACTC-GAATGCTTTCACTGATCAGAATGGTGA-ATTTGAAGAAGAT 1769
Query 1620 GATAGCGGTTGGGAAACAGTGAGCCAC-CTCGAAGAACAAGGATCGAGTTACTCACCAGA 1678
|| || || |||||||| |||||||| || |||||||| ||||| |||||||| |||||
Sbjct 1770 GACAGTGGCTGGGAAACTGTGAGCCATTCT-GAAGAACACGGATCCAGTTACTCTCCAGA 1828
Query 1679 TGGGAGCATTCCT 1691
|| |||||| |||
Sbjct 1829 TGAGAGCATCCCT 1841
> AT1G50659.1 | Symbols: | | chr1:18770937-18771930 REVERSE LENGTH=994
Length=994
Score = 717 bits (388), Expect = 0.0
Identities = 446/472 (94%), Gaps = 12/472 (3%)
Strand=Plus/Minus
Query 3 TATGGCGGTGATTAAGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TATGGCGGTGATTACGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 504
Query 63 GCTTTTGAGTCGGAAAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 122
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GCCTTTGAGTCGGATAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 444
Query 123 GCTACTACAGTCACTAAACGTCGAGCAAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 182
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 443 GCTACTACTGTCACTAAACGTCGAGCTAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 384
Query 183 GTTGCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCGCTATTGAAATGGAAGGTGGAG 242
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 383 GGTCCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCTTTATTGAAATGGAAGGTGGAG 324
Query 243 GATCGGAATAAAGAGAGAAGCGGCGTTGTCGAAGACGATGATTACGAGGATGATGGATGT 302
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 323 GATCGGAATAAAGAGAGAAGCGGCGTTGTAGAAGACGATGATTACGAGGATGAT--A--- 269
Query 303 AGTAATAATAACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 362
| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 A-TCA------CCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 216
Query 363 TCACGGCCTGTCTCTGTTAGGAAACTCGCCGCCGGGCTATGGCGGTTGCAAGTTCCTGAC 422
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 215 GCACGGCCTGTCTCTGTTAGGAAACTCGCCGCTGGGCTATGGCGGTTGCAAGTTCCTGAC 156
Query 423 GCGAGTTCTAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGG 474
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GCGAGTTCCAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGG 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110642001180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5