BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923523

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49880.1 | Symbols: Erv1 | Erv1/Alr family protein | chr1:18...   230    8e-60


> AT1G49880.1 | Symbols: Erv1 | Erv1/Alr family protein | chr1:18464017-18466077 
FORWARD LENGTH=803
Length=803

 Score =  230 bits (124),  Expect = 8e-60
 Identities = 159/176 (90%), Gaps = 2/176 (1%)
 Strand=Plus/Plus

Query  122  CAAAGACAAGACTACAGGTCCTGTGACTAAAGAGGATCTCGGGAGAGCTACATGGA-GAT  180
            ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct  262  CAAGGACAAGTCTACTGGTCCTGTGACTAAAGAGGATCTCGGGAGAGCTACATGGACG-T  320

Query  181  TTCTGCATACTCTTGCTGCGAAGTATCCAGAAAAACCAACAAAGCAGCAAAACAAGGATG  240
            |||| || |||||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct  321  TTCTTCACACTCTTGCTGCGCAGTATCCAGAAAAACCAACAAGGCAGCAAAAAAAGGATG  380

Query  241  TCAAAGATTTGATGGCGATACTTTCTCGAATGTACCCTAGTAGAGAATGTGCGGAT  296
            | |||||  ||||| |||||||||| |||||||| ||| |||||||||||||||||
Sbjct  381  TTAAAGAGCTGATGACGATACTTTCCCGAATGTATCCTTGTAGAGAATGTGCGGAT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14828985955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5